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Protein Overview: SPAC1F12.05

General Information:
Name(s) found: SPAC1F12.05 [Sanger Pombe]
Description(s) found:
Found 16 descriptions.
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  • conserved fungal protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 377 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    clathrin-coated vesicle [ISS]
    Biological Process: ubiquitin-dependent endocytosis [ISS]
    Molecular Function: ubiquitin protein ligase binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSLVRRFQH ASTEEQPFEL NIQMESPPLV MYGNPDVSSG ALASGLAKLT VFPADLKCES  60
   61 IVMEFVRIIS TKRPLRDSCP DCKAQVEAFE KWEFSKEPTV YTHGTHTWPF TFIIPGHFPQ 120
  121 TTNSPFINVT YILKTRVKIP SQPDFVFEYP LNLKRSIVTN ADKIAQRLFP PTSLIALLEL 180
  181 PPVIHPLSCV PVEFQLTGVK PENSKVGWRL TKISWRIEEQ IKAQINGCST HTGTKKPYIF 240
  241 KETRLLGNNE HKSGWKEDGD RIIFEIPIST SLLSKPICDV SFDGQFSLYI AHQLILETIV 300
  301 VEVMNSHPIN SNARILRMKV NLPLTERGGL GVSWDEECPP MFNSVGPSPP AYEQVARSSP 360
  361 TDIPLPPPSC PTNVQRD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..100] deduced N/A No confident structure predictions are available.
    2 View Details [101..377] PSI-BLAST 6.69897 Arrestin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • clathrin binding
    		•  2.75916108281518 bayes_pls_golite062009
  • binding
    		•  2.5075656948209 bayes_pls_golite062009
  • protein binding
    		•  1.71025015568774 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.929966017205863 bayes_pls_golite062009
  • potassium channel activity
    		•  0.871728492941793 bayes_pls_golite062009
  • voltage-gated cation channel activity
    		•  0.848303301157398 bayes_pls_golite062009
  • voltage-gated ion channel activity
    		•  0.829939555243379 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.829140804686535 bayes_pls_golite062009
  • voltage-gated channel activity
    		•  0.820413268771765 bayes_pls_golite062009
  • channel activity
    		•  0.796075411518814 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.796075411518814 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  0.790863065462458 bayes_pls_golite062009
  • voltage-gated potassium channel activity
    		•  0.787347074261486 bayes_pls_golite062009
  • cation channel activity
    		•  0.770955130885998 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.760234877475175 bayes_pls_golite062009
  • ion channel activity
    		•  0.743051345681968 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  0.735623329949285 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.698762820554681 bayes_pls_golite062009
  • gated channel activity
    		•  0.62499749903999 bayes_pls_golite062009
  • inward rectifier potassium channel activity
    		•  0.43450134854604 bayes_pls_golite062009
  • ligand-gated channel activity
    		•  0.302082279531376 bayes_pls_golite062009
  • ligand-gated ion channel activity
    		•  0.302082279531376 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.24498703916422 bayes_pls_golite062009
  • actin binding
    		•  0.15943777627145 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle