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Protein Overview: SPAC1D4.09c

General Information:
Name(s) found: SPAC1D4.09c [Sanger Pombe]
Description(s) found:
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  • gi|7490918|pir||T38050 hypothetical protein SPAC1D4.09c - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|227330355|emb|CAY19193.1| rtf2 factor [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113934|ref|NP_593022.1| DUF602 family protein [Schizosaccharomyces pombe] [NCBI NR]
  • gi|1723231|sp|Q10154.1|YAT9_SCHPO RecName: Full=UPF0549 protein C1D4.09c [NCBI NR]
  • gi|1177342|emb|CAA93218.1| replication termination factor Rtf2 [Schizosaccharomyces pombe] [NCBI NR]
  • DUF602 family protein [Sanger Pombe]
  • UPF0549 protein C1D4.09c OS=Schizosaccharomyces pombe GN=SPAC1D4.09c PE=2 SV=1 [Swiss-Prot]
  • CONSERVED PROTEIN; NO APPARENT S. CEREVISIAE ORTHOLOG: Q10154; [pompepVF.fasta]
  • CONSERVED HYPOTHETICAL PROTEIN; NO S. CEREVISIAE HOMOLOGUE: Q10154; [pompepV13]
  • Hypothetical protein C1D4.09c in chromosome I [pompep4896]
  • |||conserved protein [pompepnew.fasta]
  • |||conserved protein|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|1177342|emb|CAA93218.1| SPAC1D4.09c [Schizosaccharomyces pombe]gi|1723231|sp|Q10154|YAT9_SCHPO Hypothetical protein C1D4.09c in chromosome Igi|7490918|pir||T38050 hypothetical protein SPAC1D4.09c - fis [nrdb_11152004_Chlamydomonas]
  • |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (Q10154) Hypothetical protein C1D4.09c in chromosome I [pompep4896_normal_reversed]
  • |rtf2||replication termination factor Rtf2|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPAC1D4.09c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC1D4.09c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • |||DUF602 family protein|Schizosaccharomyces pombe|chr 1|||Manual [spombe-190209-contam.fasta]
  • Rtf2 factor OS=Schizosaccharomyces pombe GN=rtf2 PE=4 SV=1 [UniProt_SPombe_10-04-2010_reversed.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 240 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][NAS]
    Biological Process: DNA replication termination [NAS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNDGGSLPT RNELVKEPGK VPPLDIDFKR SVKSSQFSQC AITDEPLYPP IVSCGLGKLY  60
   61 NKASILQMLL DRSSVPKSPS HIKSLKDVVQ LQVELDDSGK VLWLCPITRH VMSDTYQFAY 120
  121 IVPCGHVFEY SALKQFGEKM CFQCNQVYEE KDVIPINPNA EQLKTLSKRL LDLALSEKTH 180
  181 SLNKASKKSN KNGDKKRKHV SKSNSKHAKH ELRTNRMLDG ENVKSETSVT DMERVKRVKI 240
  241

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..95] FFAS03 1.23 Solution structure of the U-box in human ubiquitin conjugation factor E4A
    2 View Details [96..240] PSI-BLAST 15.522879 Not-4 N-terminal RING finger domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.11628925728357 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.34809367817517 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.29443396975472 bayes_pls_golite062009
  • DNA binding
    		•  0.857401028646596 bayes_pls_golite062009
  • protein binding
    		•  0.789504040348248 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.610199329263848 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.423647874943815 bayes_pls_golite062009
  • transcription factor binding
    		•  0.315997284960041 bayes_pls_golite062009
  • catalytic activity
    		•  0.168711389690753 bayes_pls_golite062009
  • transcription factor activity
    		•  0.14897188736485 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  2.19426901055464 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.37997261357301 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.30336876036582 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  1.00637609953328 bayes_pls_golite062009
  • protein binding
    		•  0.901145726644172 bayes_pls_golite062009
  • DNA binding
    		•  0.853765620233342 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.81824834538312 bayes_pls_golite062009
  • transcription factor binding
    		•  0.44693666623428 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.302877642467793 bayes_pls_golite062009
  • ligase activity
    		•  0.144761439114831 bayes_pls_golite062009
  • transcription factor activity
    		•  0.142558352745445 bayes_pls_golite062009
  • catalytic activity
    		•  0.14112008370434 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle