| Protein: | SPAC1D4.09c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 240 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1D4.09c.
| Description | E-value | Query Range |
Subject Range |
|
|
205.0 | [0..1] | [231..1] |
|
|
204.0 | [0..1] | [218..1] |
|
|
203.0 | [0..1] | [215..1] |
|
|
203.0 | [0..1] | [215..1] |
|
|
203.0 | [0..1] | [227..1] |
|
|
203.0 | [0..1] | [215..1] |
|
|
203.0 | [0..1] | [229..1] |
|
|
203.0 | [0..1] | [239..1] |
|
Region A: Residues: [1-95] |
1 11 21 31 41 51
| | | | | |
1 MGNDGGSLPT RNELVKEPGK VPPLDIDFKR SVKSSQFSQC AITDEPLYPP IVSCGLGKLY 60
61 NKASILQMLL DRSSVPKSPS HIKSLKDVVQ LQVEL
|
| Detection Method: |  |
| Confidence: | 1.23 |
| Match: | 1wgmA |
| Description: | Solution structure of the U-box in human ubiquitin conjugation factor E4A |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.11628925728357 | bayes_pls_golite062009 |
| transcription regulator activity | 1.34809367817517 | bayes_pls_golite062009 |
| nucleic acid binding | 1.29443396975472 | bayes_pls_golite062009 |
| DNA binding | 0.857401028646596 | bayes_pls_golite062009 |
| protein binding | 0.789504040348248 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.610199329263848 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.423647874943815 | bayes_pls_golite062009 |
| transcription factor binding | 0.315997284960041 | bayes_pls_golite062009 |
| catalytic activity | 0.168711389690753 | bayes_pls_golite062009 |
| transcription factor activity | 0.14897188736485 | bayes_pls_golite062009 |
|
Region A: Residues: [96-240] |
1 11 21 31 41 51
| | | | | |
1 DDSGKVLWLC PITRHVMSDT YQFAYIVPCG HVFEYSALKQ FGEKMCFQCN QVYEEKDVIP 60
61 INPNAEQLKT LSKRLLDLAL SEKTHSLNKA SKKSNKNGDK KRKHVSKSNS KHAKHELRTN 120
121 RMLDGENVKS ETSVTDMERV KRVKI
|
| Detection Method: | |
| Confidence: | 15.522879 |
| Match: | 1e4uA |
| Description: | Not-4 N-terminal RING finger domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.19426901055464 | bayes_pls_golite062009 |
| transcription regulator activity | 1.37997261357301 | bayes_pls_golite062009 |
| nucleic acid binding | 1.30336876036582 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.00637609953328 | bayes_pls_golite062009 |
| protein binding | 0.901145726644172 | bayes_pls_golite062009 |
| DNA binding | 0.853765620233342 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.81824834538312 | bayes_pls_golite062009 |
| transcription factor binding | 0.44693666623428 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.302877642467793 | bayes_pls_golite062009 |
| ligase activity | 0.144761439114831 | bayes_pls_golite062009 |
| transcription factor activity | 0.142558352745445 | bayes_pls_golite062009 |
| catalytic activity | 0.14112008370434 | bayes_pls_golite062009 |
