Protein Overview: SPAC1D4.09c

General Information:
Name(s) found:	SPAC1D4.09c [Sanger Pombe]
Description(s) found: Found 20 descriptions. SHOW ALL	DUF602 family protein [Sanger Pombe]
Organism:	Schizosaccharomyces pombe
Length:	240 amino acids
Gene Ontology:
Cellular Component:	nucleus [IDA][NAS]
Biological Process:	DNA replication termination [NAS]
Molecular Function:	molecular_function [ND]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNDGGSLPT RNELVKEPGK VPPLDIDFKR SVKSSQFSQC AITDEPLYPP IVSCGLGKLY  60
   61 NKASILQMLL DRSSVPKSPS HIKSLKDVVQ LQVELDDSGK VLWLCPITRH VMSDTYQFAY 120
  121 IVPCGHVFEY SALKQFGEKM CFQCNQVYEE KDVIPINPNA EQLKTLSKRL LDLALSEKTH 180
  181 SLNKASKKSN KNGDKKRKHV SKSNSKHAKH ELRTNRMLDG ENVKSETSVT DMERVKRVKI 240
  241

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..95]	FFAS03	1.23	Solution structure of the U-box in human ubiquitin conjugation factor E4A
2	View Details	[96..240]	PSI-BLAST	15.522879	Not-4 N-terminal RING finger domain

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
binding	2.11628925728357	bayes_pls_golite062009
transcription regulator activity	1.34809367817517	bayes_pls_golite062009
nucleic acid binding	1.29443396975472	bayes_pls_golite062009
DNA binding	0.857401028646596	bayes_pls_golite062009
protein binding	0.789504040348248	bayes_pls_golite062009
small conjugating protein ligase activity	0.610199329263848	bayes_pls_golite062009
ubiquitin-protein ligase activity	0.423647874943815	bayes_pls_golite062009
transcription factor binding	0.315997284960041	bayes_pls_golite062009
catalytic activity	0.168711389690753	bayes_pls_golite062009
transcription factor activity	0.14897188736485	bayes_pls_golite062009

2

Term	Confidence	Notes
binding	2.19426901055464	bayes_pls_golite062009
transcription regulator activity	1.37997261357301	bayes_pls_golite062009
nucleic acid binding	1.30336876036582	bayes_pls_golite062009
small conjugating protein ligase activity	1.00637609953328	bayes_pls_golite062009
protein binding	0.901145726644172	bayes_pls_golite062009
DNA binding	0.853765620233342	bayes_pls_golite062009
ubiquitin-protein ligase activity	0.81824834538312	bayes_pls_golite062009
transcription factor binding	0.44693666623428	bayes_pls_golite062009
acid-amino acid ligase activity	0.302877642467793	bayes_pls_golite062009
ligase activity	0.144761439114831	bayes_pls_golite062009
transcription factor activity	0.142558352745445	bayes_pls_golite062009
catalytic activity	0.14112008370434	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle