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Protein Overview: srp102

General Information:
Name(s) found: srp102 / SPAC23H4.07c [Sanger Pombe]
Description(s) found:
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  • pir||T38321 probable signal recognition particle receptor beta subunit - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|2388926|emb|CAB11661.1| signal recognition particle receptor beta subunit Srp102 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19114311|ref|NP_593399.1| signal recognition particle receptor beta subunit Srp102 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|14195224|sp|O13950.1|SRPB_SCHPO RecName: Full=Signal recognition particle receptor subunit beta; Short=SR-beta [NCBI NR]
  • signal recognition particle receptor beta subunit Srp102 [Sanger Pombe]
  • Signal recognition particle receptor subunit beta OS=Schizosaccharomyces pombe GN=srp102 PE=2 SV=1 [Swiss-Prot]
  • PUTATIVE SIGNAL RECOGNITION PARTICLE RECEPTOR BETA SUBUNIT: O13950;Q9USB4; [pompepVF.fasta]
  • Putative signal recognition particle receptor beta subunit (SR-beta) [pompep4896]
  • |srp102||putative signal recognition particle subunit predicted N-terminal signal sequence [pompepnew.fasta]
  • |srp102||localization signal recognition particle (beta subunit) (predicted)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • putative signal recognition particle receptor beta subunit [Schizosaccharomyces pombe]gi|2388926|emb|CAB11661.1| SPAC23H4.07c [Schizosaccharomyces pombe]gi|7492973|pir||T38321 probable signal recognition particle receptor beta subunit - fission yeast (S [nrdb_11152004_Chlamydomonas]
  • |srp102||localization signal recognition particle |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (O13950) Putative signal recognition particle receptor beta subunit (SR-beta) [pompep4896_normal_reversed]
  • |srp102||signal recognition particle receptor |Schizosaccharomyces pombe|chr 1|||Manual [pombe030305.revfasta]
  • |srp102||signal recognition particle receptor beta subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • Signal recognition particle receptor subunit beta (SR-beta) [nr-271106-contam.fasta]
  • hypothetical protein SPAC23H4.07c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC23H4.07c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Signal recognition particle receptor subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp102 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 227 amino acids

    Gene Ontology:
    Cellular Component: ribonucleoprotein complex [IEA]
    integral to membrane [IEA]
    endoplasmic reticulum [IDALink to PubMed article]
    signal recognition particle receptor complex [ISSLink to PubMed article]
    Biological Process: SRP-dependent cotranslational protein targeting to membrane [ICLink to PubMed article]
    Molecular Function: GTP binding [IEA]
    signal recognition particle binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGTSQAFKI IVATIIIGAI ISTLGIFFTR KTIQKKLPAV FLIGPSDSGK TSLFCELIYK  60
   61 EKKTTVPSIE PNEAVWKYGA WLVDLPGHPR AKRWITTKFS GNYNVKAVVF VLNSATIDRD 120
  121 VHEVGLMLFD TILKCRKHHV PHLLIACNKF DLFTAQPAEK IQQLLKAELH NILEEKNLQL 180
  181 ESIVSEDVDW ESVADQIEDT DLKFLPGSVA KMSNIEEWIS WMESALQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..227] PSI-BLAST 16.09691 The Structure of the Mammalian SRP Receptor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • signal recognition particle binding
    		•  5.12760449152779 bayes_pls_golite062009
  • ribonucleoprotein binding
    		•  3.19511216911452 bayes_pls_golite062009
  • transporter activity
    		•  3.10463051760206 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.95886887664984 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  2.95079405147356 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.87427509025394 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.85499564954033 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.85178667290149 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  2.61775212528604 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  2.61467977505707 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  2.57552435627908 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  2.57107347424517 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  2.57054427875021 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  2.50494515048649 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  2.43862163407966 bayes_pls_golite062009
  • ATPase activity
    		•  2.39535714892224 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.91091452720653 bayes_pls_golite062009
  • binding
    		•  1.76582493975071 bayes_pls_golite062009
  • protein transporter activity
    		•  1.71214667007262 bayes_pls_golite062009
  • hydrolase activity
    		•  1.57549510726226 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.56325751172863 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.977237423302079 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.929901285538132 bayes_pls_golite062009
  • nucleotide binding
    		•  0.922442819194247 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.920987930180051 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.920926158369519 bayes_pls_golite062009
  • motor activity
    		•  0.87979065815418 bayes_pls_golite062009
  • guanyl nucleotide binding
    		•  0.640772201693186 bayes_pls_golite062009
  • guanyl ribonucleotide binding
    		•  0.63468044350616 bayes_pls_golite062009
  • GTP binding
    		•  0.621689261700018 bayes_pls_golite062009
  • protein binding
    		•  0.569246647740442 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.557919489256916 bayes_pls_golite062009
  • catalytic activity
    		•  0.458437698837681 bayes_pls_golite062009
  • GTPase activity
    		•  0.437665353870877 bayes_pls_golite062009
  • ATP binding
    		•  0.41092997612902 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.385813421701492 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.377870145186619 bayes_pls_golite062009
  • hydrogen ion transporting ATP synthase activity, rotational mechanism
    		•  0.213018989352421 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  0.123304946374679 bayes_pls_golite062009
  • ligand-gated channel activity
    		•  0.0767967479760561 bayes_pls_golite062009
  • ligand-gated ion channel activity
    		•  0.0767967479760561 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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