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Protein Overview: prp10

General Information:
Name(s) found: prp10 / SPAC27F1.09c [Sanger Pombe]
Description(s) found:
Found 16 descriptions.
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  • U2 snRNP-associated protein Sap155 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1188 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed articleLink to PubMed article]
    spliceosomal complex [RCALink to PubMed article]
    U2 snRNP [ISSLink to PubMed article]
    Biological Process: spliceosome assembly [ISSLink to PubMed article]
    nuclear mRNA splicing, via spliceosome [IMPLink to PubMed article]
    Molecular Function: mRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVEDVEIE RLRAERELLR RQKEAAKNSS TNGSVNIEGT QDSNDLQYNA HLFKSSNPKE  60
   61 EYDSAIDVRN DISQDEDDYK RTNDVNDSYR LVRQYEAPKE LLNEYADESY DPMQERQSKK 120
  121 QIQDRESDYQ KQRYDRQLTP TRVDAFQPDG TQSNGRSYAE VMRQVELEKE ERRVHMELNQ 180
  181 RRREGTLKEV EEEESISDKK RELELNNTEI SQKPKRSRWD QAPPSVTQVS TTKRRSRWDK 240
  241 APENFTISEH VIENGISEDL INKEVNVVEE KLRPPVRLLT EEELNELLPS EGYAILEPPP 300
  301 GYLESIHPEL LQKGTTLDTY HVPQEQELPL EKELPAALPT EIPGVGDLAF FKQEDVKYFG 360
  361 KLLKVEDEAK LTIAELRERK ILRLLLKVKN GTPPMRKSAL RQLTDQARDF GAAALFNQIL 420
  421 PLLMERTLED QERHLLVKVI DRILYKLDDL VRPFTHKILV VIEPLLIDED YYARAEGREI 480
  481 ISNLAKASGL AHMIATMRPD IDHVDEYVRN TTARAFSVVA SALGVPALLP FLKAVCRSKK 540
  541 SWQARHTGVR IIQQIALLLG CSILPHLKNL VDCIGHGLED EQQKVRIMTA LSLSALAEAA 600
  601 TPYGIEAFDS VLKPLWSGVQ RHRGKSLAAF LKATGFIIPL MEPEYASHFT RRIMKILLRE 660
  661 FNSPDEEMKK IVLKVVSQCA STDGVTPEYL RTDVLPEFFH CFWSRRMASD RRSYKQVVET 720
  721 TVVLAQQVGS RQIVERVVNN FKDESEPYRK MTAETVDKVI GSLGVSEIDE RLEELLLDGV 780
  781 LFAFQEQSVE EKVILTCFST VVNALGTRCK PYLPQIVSTI LYRLNNKSAN VREQAADLVS 840
  841 SITIVLKACG EEALMRKLGV VLYEYLGEEY PEVLGSILGA IKAIVSVVGM SSMQPPIRDL 900
  901 LPRLTPILRN RHEKVQENTI DLVGKIADRG SEYVSAREWM RICFELIDML KAHKKSIRRA 960
  961 AVNTFGYISK AIGPQDVLAT LLNNLKVQER QNRVCTTVAI AIVAETCMPF TVVPALMADY1020
 1021 RTPEMNVQNG VLKSLAFMFE YIGEQARDYV YAITPLLADA LMDRDAVHRQ TAASVIKHLS1080
 1081 LGCVGLGVED AMIHLLNILW PNILEESPHV INAVREGIDG IRNCIGVGPI MAYLVQGLFH1140
 1141 PSRKVRNTYW TSYNSAYVQS ADAMVPYYPH VDDDQFNNYD MKTLHICI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..166] MSA 1.029966 View MSA. No confident structure predictions are available.
    2 View Details [167..306] Pfam 5.187087 No description for PF08920.1 was found. No confident structure predictions are available.
    3 View Details [307..363] PSI-BLAST 42.0 Importin beta
    4 View Details [364..1188] PSI-BLAST 74.30103 Karyopherin beta2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • RNA binding
    		•  4.20683443264388 bayes_pls_golite062009
  • binding
    		•  2.91891696274037 bayes_pls_golite062009
  • mRNA binding
    		•  2.49094746544717 bayes_pls_golite062009
  • protein binding
    		•  1.75981610748679 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.64539435934931 bayes_pls_golite062009
  • structural molecule activity
    		•  1.39201458088376 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.06250847754412 bayes_pls_golite062009
  • DNA binding
    		•  0.946847037737779 bayes_pls_golite062009
  • RNA cap binding
    		•  0.66277586901495 bayes_pls_golite062009
  • transcription factor activity
    		•  0.362911773502049 bayes_pls_golite062009
  • signal sequence binding
    		•  0.289133192719901 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.79

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle