| Protein: | prp10 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1188 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for prp10.
| Description | E-value | Query Range |
Subject Range |
|
|
906.0 | [0..1] | [1188..1] |
|
|
904.0 | [0..1] | [1188..1] |
|
|
894.0 | [0..1] | [1188..1] |
|
|
893.0 | [0..1] | [1188..1] |
|
|
876.0 | [0..1] | [1188..1] |
|
|
869.0 | [0..1] | [1188..1] |
|
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866.0 | [0..1] | [1188..1] |
|
|
858.0 | [0..2] | [1188..19] |
|
|
852.0 | [0..1] | [1188..1] |
|
|
836.0 | [0..3] | [1186..7] |
|
Region A: Residues: [1-166] |
1 11 21 31 41 51
| | | | | |
1 MSTVEDVEIE RLRAERELLR RQKEAAKNSS TNGSVNIEGT QDSNDLQYNA HLFKSSNPKE 60
61 EYDSAIDVRN DISQDEDDYK RTNDVNDSYR LVRQYEAPKE LLNEYADESY DPMQERQSKK 120
121 QIQDRESDYQ KQRYDRQLTP TRVDAFQPDG TQSNGRSYAE VMRQVE
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [167-306] |
1 11 21 31 41 51
| | | | | |
1 LEKEERRVHM ELNQRRREGT LKEVEEEESI SDKKRELELN NTEISQKPKR SRWDQAPPSV 60
61 TQVSTTKRRS RWDKAPENFT ISEHVIENGI SEDLINKEVN VVEEKLRPPV RLLTEEELNE 120
121 LLPSEGYAIL EPPPGYLESI
|
| Detection Method: | |
| Confidence: | 5.187087 |
| Match: | PF08920.1 |
| Description: | No description for PF08920.1 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [307-363] |
1 11 21 31 41 51
| | | | | |
1 HPELLQKGTT LDTYHVPQEQ ELPLEKELPA ALPTEIPGVG DLAFFKQEDV KYFGKLL
|
| Detection Method: | |
| Confidence: | 42.0 |
| Match: | 1qgkA |
| Description: | Importin beta |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [364-1188] |
1 11 21 31 41 51
| | | | | |
1 KVEDEAKLTI AELRERKILR LLLKVKNGTP PMRKSALRQL TDQARDFGAA ALFNQILPLL 60
61 MERTLEDQER HLLVKVIDRI LYKLDDLVRP FTHKILVVIE PLLIDEDYYA RAEGREIISN 120
121 LAKASGLAHM IATMRPDIDH VDEYVRNTTA RAFSVVASAL GVPALLPFLK AVCRSKKSWQ 180
181 ARHTGVRIIQ QIALLLGCSI LPHLKNLVDC IGHGLEDEQQ KVRIMTALSL SALAEAATPY 240
241 GIEAFDSVLK PLWSGVQRHR GKSLAAFLKA TGFIIPLMEP EYASHFTRRI MKILLREFNS 300
301 PDEEMKKIVL KVVSQCASTD GVTPEYLRTD VLPEFFHCFW SRRMASDRRS YKQVVETTVV 360
361 LAQQVGSRQI VERVVNNFKD ESEPYRKMTA ETVDKVIGSL GVSEIDERLE ELLLDGVLFA 420
421 FQEQSVEEKV ILTCFSTVVN ALGTRCKPYL PQIVSTILYR LNNKSANVRE QAADLVSSIT 480
481 IVLKACGEEA LMRKLGVVLY EYLGEEYPEV LGSILGAIKA IVSVVGMSSM QPPIRDLLPR 540
541 LTPILRNRHE KVQENTIDLV GKIADRGSEY VSAREWMRIC FELIDMLKAH KKSIRRAAVN 600
601 TFGYISKAIG PQDVLATLLN NLKVQERQNR VCTTVAIAIV AETCMPFTVV PALMADYRTP 660
661 EMNVQNGVLK SLAFMFEYIG EQARDYVYAI TPLLADALMD RDAVHRQTAA SVIKHLSLGC 720
721 VGLGVEDAMI HLLNILWPNI LEESPHVINA VREGIDGIRN CIGVGPIMAY LVQGLFHPSR 780
781 KVRNTYWTSY NSAYVQSADA MVPYYPHVDD DQFNNYDMKT LHICI
|
| Detection Method: | |
| Confidence: | 74.30103 |
| Match: | 1qbkB |
| Description: | Karyopherin beta2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.20683443264388 | bayes_pls_golite062009 |
| binding | 2.91891696274037 | bayes_pls_golite062009 |
| mRNA binding | 2.49094746544717 | bayes_pls_golite062009 |
| protein binding | 1.75981610748679 | bayes_pls_golite062009 |
| nucleic acid binding | 1.64539435934931 | bayes_pls_golite062009 |
| structural molecule activity | 1.39201458088376 | bayes_pls_golite062009 |
| transcription regulator activity | 1.06250847754412 | bayes_pls_golite062009 |
| DNA binding | 0.946847037737779 | bayes_pls_golite062009 |
| RNA cap binding | 0.66277586901495 | bayes_pls_golite062009 |
| transcription factor activity | 0.362911773502049 | bayes_pls_golite062009 |
| signal sequence binding | 0.289133192719901 | bayes_pls_golite062009 |
