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Protein Overview: rsv1

General Information:
Name(s) found: rsv1 / SPBP4H10.09 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • transcription factor Rsv1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 428 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    spindle [IDALink to PubMed article]
    Biological Process: negative regulation of cellular carbohydrate metabolic process by repression of transcription [IEPLink to PubMed article]
    negative regulation of carbohydrate metabolic process [IEPLink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    cellular response to glucose starvation [IMPLink to PubMed article]
    negative regulation of transcription from RNA polymerase II promoter, meiotic [IEPLink to PubMed article]
    Molecular Function: transcription factor activity [NASLink to PubMed article]
    zinc ion binding [IEA]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]
    specific transcriptional repressor activity [IEPLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSYECPFCK RVFHRQEHQV RHIRSHTGEK PFECSYPSCK KRFTRRDELI RHVRTHLRKA  60
   61 LVTPEQTLDV NLHKAPDSKP EGDKSTGQEA DKSQNQSKDG SITDPVQAAV LALSVAYAKP 120
  121 TSVSLSPTDL QAQSKLIEKP RRRSASNATG SLNKKNQDPL RRFSISESAG AAAPTPSPSN 180
  181 SKSPPSENRK NRLQNVLSPI ASNNVPDFNQ NYPTESNPMF LSTPRFQNTN GQRTLTVPVS 240
  241 VWDARQPPTS SRSGLPLSVM YNHFPSVPIP PATVNDTSME YYLPNAYPHP TGISLPFYPF 300
  301 DSGIPVSPNI PVSPSSSFVP MYPTTFPSSK PQIVNAPPAP SYFSPGSSFG AQLCANGSTL 360
  361 LRADTKQYGL ALPKITNSNL ISPNQTFNPV KSSVKALPTL EPPSSPSHAT ATSSLHTLFH 420
  421 TAPSRSYD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..235] PSI-BLAST 23.39794 Transcription factor IIIA, TFIIIA
    2 View Details [236..308] deduced N/A No confident structure predictions are available.
    3 View Details [309..428] FFAS03 1.01 No description for 2j63A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.70988788192472 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.58713908116892 bayes_pls_golite062009
  • DNA binding
    		•  4.56219307357342 bayes_pls_golite062009
  • transcription factor activity
    		•  3.50954949535763 bayes_pls_golite062009
  • transcription repressor activity
    		•  3.27542149084008 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.22082323675675 bayes_pls_golite062009
  • binding
    		•  3.10743787485868 bayes_pls_golite062009
  • transcription activator activity
    		•  2.19952417915035 bayes_pls_golite062009
  • chromatin binding
    		•  2.18464662431232 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.63161912031789 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.42975942698743 bayes_pls_golite062009
  • transcription factor binding
    		•  1.39608963544799 bayes_pls_golite062009
  • transcription corepressor activity
    		•  1.34049786451995 bayes_pls_golite062009
  • protein binding
    		•  1.00484935878505 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.93314267845352 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.77874411480713 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.53991278722671 bayes_pls_golite062009
  • catalytic activity
    		•  0.245893663605433 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle