| Protein: | rsv1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 428 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rsv1.
| Description | E-value | Query Range |
Subject Range |
|
|
299.0 | [0..2] | [252..271] |
|
|
297.0 | [0..2] | [250..256] |
|
|
292.0 | [0..2] | [250..227] |
|
Region A: Residues: [1-235] |
1 11 21 31 41 51
| | | | | |
1 MKSYECPFCK RVFHRQEHQV RHIRSHTGEK PFECSYPSCK KRFTRRDELI RHVRTHLRKA 60
61 LVTPEQTLDV NLHKAPDSKP EGDKSTGQEA DKSQNQSKDG SITDPVQAAV LALSVAYAKP 120
121 TSVSLSPTDL QAQSKLIEKP RRRSASNATG SLNKKNQDPL RRFSISESAG AAAPTPSPSN 180
181 SKSPPSENRK NRLQNVLSPI ASNNVPDFNQ NYPTESNPMF LSTPRFQNTN GQRTL
|
| Detection Method: |  |
| Confidence: | 23.39794 |
| Match: | 1tf6A |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.93314267845352 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.53991278722671 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [236-308] |
1 11 21 31 41 51
| | | | | |
1 TVPVSVWDAR QPPTSSRSGL PLSVMYNHFP SVPIPPATVN DTSMEYYLPN AYPHPTGISL 60
61 PFYPFDSGIP VSP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [309-428] |
1 11 21 31 41 51
| | | | | |
1 NIPVSPSSSF VPMYPTTFPS SKPQIVNAPP APSYFSPGSS FGAQLCANGS TLLRADTKQY 60
61 GLALPKITNS NLISPNQTFN PVKSSVKALP TLEPPSSPSH ATATSSLHTL FHTAPSRSYD 120
121
|
| Detection Method: | |
| Confidence: | 1.01 |
| Match: | 2j63A |
| Description: | No description for 2j63A was found. |
