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Protein Overview: nup61

General Information:
Name(s) found: nup61 / SPCC18B5.07c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • nucleoporin Nup61 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 565 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nuclear membrane [IDALink to PubMed article]
    nuclear pore [TASLink to PubMed article]
    Biological Process: mitotic cell cycle spindle assembly checkpoint [IMPLink to PubMed article]
    nucleocytoplasmic transport [TASLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRGADHQL TKDQDDSDDD RHGPVEVPKE ASADVMATRK IAKPKSRKRP TSGVSSPGIF  60
   61 ANLAAKPVSL PASTTQFTFG KPAVTANNDS DIHLKKRGLN KSFIDAVIKS VDNNPFGNLS 120
  121 PLFDEYRQHF SSIEKKPAEG NAFIVSTSFL SNVFLEQPTS NAVVSEVNPQ QQKSQDSSSF 180
  181 VTEKPASSEK EDKEKPLVPP GAPRFGFSAP ALGSSFQFNS SAFTPKGSFG EKSATEAEAK 240
  241 EKETSSNQTA TGTAATTTNQ FSFNTAANPF AFAKKENEES KPLTPVFSFS TTMASADASK 300
  301 ETKQTHETKD SKSEESKPSN NEKSENAVEP AKGNTMSFSW TPDKPIKFDT PEKKFTFTNP 360
  361 LSSKKLPASS DVKPPSAAAV GFSFGTTTNP FSFAAPKSSF PTSSTPASVG AEKSEETSNG 420
  421 NKSEQEEKEN GNDETRSNDS LVSGKGKGEE NEDSVFETRA KIYRFDATSK SYSDIGIGPL 480
  481 KINVDRDTGS ARILARVEGS GKLLLNVRLC QDFEYSLAGK KDVKVPAAST DGKSIEMYLI 540
  541 RVKEPSTAEK LLAELNEKKV SKSEN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..166] MSA 5.176995 View MSA. No confident structure predictions are available.
    2 View Details [167..343] MSA 2.180994 View MSA. No confident structure predictions are available.
    3 View Details [344..434] deduced N/A No confident structure predictions are available.
    4 View Details [435..565] PSI-BLAST 42.0 Nuclear pore complex protein Nup358

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  3.29080729281876 bayes_pls_golite062009
  • protein binding
    		•  2.12168271674167 bayes_pls_golite062009
  • transporter activity
    		•  1.28986800087234 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.15625292719687 bayes_pls_golite062009
  • signal transducer activity
    		•  1.15625292719687 bayes_pls_golite062009
  • Ran GTPase binding
    		•  1.07023555877478 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.79883446648737 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.74133713912741 bayes_pls_golite062009
  • actin binding
    		•  0.57235223545021 bayes_pls_golite062009
  • receptor activity
    		•  0.369903612832044 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.324566338715835 bayes_pls_golite062009
  • protein domain specific binding
    		•  0.18356841109571 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  0.159652062741581 bayes_pls_golite062009
  • DNA binding
    		•  0.136435190086451 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.118897432176337 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.0611639610381174 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.0524559849408587 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.0498422520006935 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle