| Protein: | nup61 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 565 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nup61.
| Description | E-value | Query Range |
Subject Range |
|
|
220.0 | [0..246] | [565..1109] |
|
|
215.0 | [0..246] | [565..1115] |
|
|
212.0 | [0..246] | [565..1133] |
|
Region A: Residues: [1-166] |
1 11 21 31 41 51
| | | | | |
1 MSKRGADHQL TKDQDDSDDD RHGPVEVPKE ASADVMATRK IAKPKSRKRP TSGVSSPGIF 60
61 ANLAAKPVSL PASTTQFTFG KPAVTANNDS DIHLKKRGLN KSFIDAVIKS VDNNPFGNLS 120
121 PLFDEYRQHF SSIEKKPAEG NAFIVSTSFL SNVFLEQPTS NAVVSE
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [167-343] |
1 11 21 31 41 51
| | | | | |
1 VNPQQQKSQD SSSFVTEKPA SSEKEDKEKP LVPPGAPRFG FSAPALGSSF QFNSSAFTPK 60
61 GSFGEKSATE AEAKEKETSS NQTATGTAAT TTNQFSFNTA ANPFAFAKKE NEESKPLTPV 120
121 FSFSTTMASA DASKETKQTH ETKDSKSEES KPSNNEKSEN AVEPAKGNTM SFSWTPD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [344-434] |
1 11 21 31 41 51
| | | | | |
1 KPIKFDTPEK KFTFTNPLSS KKLPASSDVK PPSAAAVGFS FGTTTNPFSF AAPKSSFPTS 60
61 STPASVGAEK SEETSNGNKS EQEEKENGND E
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [435-565] |
1 11 21 31 41 51
| | | | | |
1 TRSNDSLVSG KGKGEENEDS VFETRAKIYR FDATSKSYSD IGIGPLKINV DRDTGSARIL 60
61 ARVEGSGKLL LNVRLCQDFE YSLAGKKDVK VPAASTDGKS IEMYLIRVKE PSTAEKLLAE 120
121 LNEKKVSKSE N
|
| Detection Method: | |
| Confidence: | 42.0 |
| Match: | 1rrpB |
| Description: | Nuclear pore complex protein Nup358 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.29080729281876 | bayes_pls_golite062009 |
| protein binding | 2.12168271674167 | bayes_pls_golite062009 |
| transporter activity | 1.28986800087234 | bayes_pls_golite062009 |
| molecular transducer activity | 1.15625292719687 | bayes_pls_golite062009 |
| signal transducer activity | 1.15625292719687 | bayes_pls_golite062009 |
| Ran GTPase binding | 1.07023555877478 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.79883446648737 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.74133713912741 | bayes_pls_golite062009 |
| actin binding | 0.57235223545021 | bayes_pls_golite062009 |
| receptor activity | 0.369903612832044 | bayes_pls_golite062009 |
| transcription regulator activity | 0.324566338715835 | bayes_pls_golite062009 |
| protein domain specific binding | 0.18356841109571 | bayes_pls_golite062009 |
| transmembrane receptor activity | 0.159652062741581 | bayes_pls_golite062009 |
| DNA binding | 0.136435190086451 | bayes_pls_golite062009 |
| nucleic acid binding | 0.118897432176337 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.0611639610381174 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.0524559849408587 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.0498422520006935 | bayes_pls_golite062009 |
