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Protein Overview: cut9

General Information:
Name(s) found: cut9 / SPAC6F12.15c [Sanger Pombe]
Description(s) found:
Found 21 descriptions.
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  • anaphase-promoting complex subunit Cut9 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 671 amino acids

    Gene Ontology:
    Cellular Component: anaphase-promoting complex [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: cyclin catabolic process [ICLink to PubMed article]
    DNA-dependent DNA replication [IMPLink to PubMed article]
    anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [ICLink to PubMed article]
    mitotic metaphase/anaphase transition [IMPLink to PubMed article]
    protein ubiquitination [ICLink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVKRTQTDS RMQSTPGNHN HPDAHANAAY MTPPSMGALN ANNSNSQLST LTISPMTYLA  60
   61 NNTSTDGSFL KERNAQNTDS LSREDYLRLW RHDALMQQQY KCAAFVGEKV LDITGNPNDA 120
  121 FWLAQVYCCT GDYARAKCLL TKEDLYNRSS ACRYLAAFCL VKLYDWQGAL NLLGETNPFR 180
  181 KDEKNANKLL MQDGGIKLEA SMCYLRGQVY TNLSNFDRAK ECYKEALMVD AKCYEAFDQL 240
  241 VSNHLLTADE EWDLVLKLNY STYSKEDAAF LRSLYMLKLN KTSHEDELRR AEDYLSSING 300
  301 LEKSSDLLLC KADTLFVRSR FIDVLAITTK ILEIDPYNLD VYPLHLASLH ESGEKNKLYL 360
  361 ISNDLVDRHP EKAVTWLAVG IYYLCVNKIS EARRYFSKSS TMDPQFGPAW IGFAHSFAIE 420
  421 GEHDQAISAY TTAARLFQGT HLPYLFLGMQ HMQLGNILLA NEYLQSSYAL FQYDPLLLNE 480
  481 LGVVAFNKSD MQTAINHFQN ALLLVKKTQS NEKPWAATWA NLGHAYRKLK MYDAAIDALN 540
  541 QGLLLSTNDA NVHTAIALVY LHKKIPGLAI THLHESLAIS PNEIMASDLL KRALEENSLT 600
  601 SGFLNSKYVF EDEVSEYMQQ SNLNTSDKSM SMEDQSGKVT ESVNDRTQVL YADSRSEMMM 660
  661 DDIEGNVSEQ R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run None Entered Lid1-TAP APC complex on iontrap. Unpublished Data

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..115] deduced N/A No confident structure predictions are available.
    2 View Details [116..197] PSI-BLAST 24.522879 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
    3 View Details [198..598] PSI-BLAST 59.0 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
    4 View Details [599..671] PSI-BLAST 17.522879 Designed protein cTPR3

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  6.63746543212322 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  6.37753885031863 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  5.68162115570289 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  4.89523122092864 bayes_pls_golite062009
  • binding
    		•  2.57186536498101 bayes_pls_golite062009
  • protein binding
    		•  1.83529176977066 bayes_pls_golite062009
  • ligase activity
    		•  1.72049482453565 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.02070055347338 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.01193875360949 bayes_pls_golite062009
  • DNA binding
    		•  0.80346414607277 bayes_pls_golite062009
  • hydrolase activity
    		•  0.619711232527193 bayes_pls_golite062009
  • transcription factor activity
    		•  0.134824164012026 bayes_pls_golite062009
  • transferase activity
    		•  0.127854220687373 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle