| Protein: | cut9 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 671 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cut9.
| Description | E-value | Query Range |
Subject Range |
|
|
383.0 | [0..10] | [666..7] |
|
|
379.0 | [0..6] | [668..207] |
|
|
353.0 | [0..8] | [668..361] |
|
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348.0 | [0..15] | [660..435] |
|
|
331.0 | [0..203] | [668..161] |
|
|
331.0 | [0..207] | [668..28] |
|
Region A: Residues: [1-115] |
1 11 21 31 41 51
| | | | | |
1 MVVKRTQTDS RMQSTPGNHN HPDAHANAAY MTPPSMGALN ANNSNSQLST LTISPMTYLA 60
61 NNTSTDGSFL KERNAQNTDS LSREDYLRLW RHDALMQQQY KCAAFVGEKV LDITG
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [116-197] |
1 11 21 31 41 51
| | | | | |
1 NPNDAFWLAQ VYCCTGDYAR AKCLLTKEDL YNRSSACRYL AAFCLVKLYD WQGALNLLGE 60
61 TNPFRKDEKN ANKLLMQDGG IK
|
| Detection Method: | |
| Confidence: | 24.522879 |
| Match: | 1fchA |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [198-598] |
1 11 21 31 41 51
| | | | | |
1 LEASMCYLRG QVYTNLSNFD RAKECYKEAL MVDAKCYEAF DQLVSNHLLT ADEEWDLVLK 60
61 LNYSTYSKED AAFLRSLYML KLNKTSHEDE LRRAEDYLSS INGLEKSSDL LLCKADTLFV 120
121 RSRFIDVLAI TTKILEIDPY NLDVYPLHLA SLHESGEKNK LYLISNDLVD RHPEKAVTWL 180
181 AVGIYYLCVN KISEARRYFS KSSTMDPQFG PAWIGFAHSF AIEGEHDQAI SAYTTAARLF 240
241 QGTHLPYLFL GMQHMQLGNI LLANEYLQSS YALFQYDPLL LNELGVVAFN KSDMQTAINH 300
301 FQNALLLVKK TQSNEKPWAA TWANLGHAYR KLKMYDAAID ALNQGLLLST NDANVHTAIA 360
361 LVYLHKKIPG LAITHLHESL AISPNEIMAS DLLKRALEEN S
|
| Detection Method: | |
| Confidence: | 59.0 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ubiquitin-protein ligase activity | 6.63746543212322 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 6.37753885031863 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 5.68162115570289 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 4.89523122092864 | bayes_pls_golite062009 |
| binding | 2.57186536498101 | bayes_pls_golite062009 |
| protein binding | 1.83529176977066 | bayes_pls_golite062009 |
| ligase activity | 1.72049482453565 | bayes_pls_golite062009 |
| transcription regulator activity | 1.02070055347338 | bayes_pls_golite062009 |
| nucleic acid binding | 1.01193875360949 | bayes_pls_golite062009 |
| DNA binding | 0.80346414607277 | bayes_pls_golite062009 |
| hydrolase activity | 0.619711232527193 | bayes_pls_golite062009 |
| transcription factor activity | 0.134824164012026 | bayes_pls_golite062009 |
| transferase activity | 0.127854220687373 | bayes_pls_golite062009 |
|
Region A: Residues: [599-671] |
1 11 21 31 41 51
| | | | | |
1 LTSGFLNSKY VFEDEVSEYM QQSNLNTSDK SMSMEDQSGK VTESVNDRTQ VLYADSRSEM 60
61 MMDDIEGNVS EQR
|
| Detection Method: | |
| Confidence: | 17.522879 |
| Match: | 1na0A |
| Description: | Designed protein cTPR3 |
Matching Structure (courtesy of the PDB): |
|
