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Protein Overview: cid13

General Information:
Name(s) found: cid13 / SPAC821.04c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • poly(A) polymerase Cid13 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 578 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: DNA replication checkpoint [IMPLink to PubMed article]
    DNA integrity checkpoint [TASLink to PubMed article]
    mRNA polyadenylation [IDALink to PubMed article]
    Molecular Function: ATP binding [IEA]
    RNA binding [IEA]
    polynucleotide adenylyltransferase activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNANCVGGC KFETRSFQYR RRIPYSLGAD PLPPVHPLSL KNLVDIDTDL ISSQLYELYD  60
   61 SIILNDSGLE RRYAFVQKLE QILKKEFPYK NIKTSLFGST QSLLASNASD IDLCIITDPP 120
  121 QCAPTTCEVS AAFARNGLKK VVCISTAKVP IVKVWDSELQ LSCDCNINKT ISTLNTRLMR 180
  181 SYVLCDPRVR PLIVMIKYWA KRRCLNDAAE GGTLTSYTIS CMVINFLQKR DPPILPSLQM 240
  241 LPHLQDSSTM TDGLDVSFFD DPDLVHGFGD KNEESLGILF VEFFRFFGYL FDYEHFVLSI 300
  301 RHGTFLSKRA KGWQFQLNNF LCVEEPFHTS RNLANTADEI TMKGIQLEFR RVFRLLAYNC 360
  361 NVDDACSQFT FPSLTDTSFM DDYVNELQLE IVPGFSHGRD SSDTSCTESP PEPSHFAWAF 420
  421 DPYNATASPY YNQNINSSID YSSIYSNDVP AIPPNVPYTF VDPYTYACYI NNNSYLPPSY 480
  481 MDFYTWYNSP YPKSSHHFDE RHGGDRHEKN LSNSRRYSRN KFHKKKQSSG PFQYYPDAFS 540
  541 FTPTDNNSPP SNSSSSEVVS PVSLHSEPVL STVQAFKS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..379] PSI-BLAST 62.154902 Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain
    2 View Details [380..578] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleotidyltransferase activity
    		•  3.46129595952031 bayes_pls_golite062009
  • RNA binding
    		•  2.46555984694381 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.23030107200799 bayes_pls_golite062009
  • DNA binding
    		•  1.74355603868839 bayes_pls_golite062009
  • binding
    		•  1.48092751553298 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.40840262614509 bayes_pls_golite062009
  • polynucleotide adenylyltransferase activity
    		•  1.24026612395993 bayes_pls_golite062009
  • transferase activity
    		•  1.1355378442847 bayes_pls_golite062009
  • DNA polymerase activity
    		•  0.920730104361505 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
    		•  0.913497340211638 bayes_pls_golite062009
  • catalytic activity
    		•  0.75232920999699 bayes_pls_golite062009
  • transcription factor binding
    		•  0.283742101207206 bayes_pls_golite062009
  • protein binding
    		•  0.117945573723438 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle