| Protein: | cid13 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 578 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cid13.
| Description | E-value | Query Range |
Subject Range |
|
|
395.0 | [0..7] | [480..383] |
|
|
348.0 | [0..7] | [462..238] |
|
|
345.0 | [0..7] | [480..86] |
|
|
344.0 | [0..16] | [556..1] |
|
|
325.0 | [0..16] | [443..1] |
|
|
313.0 | [0..51] | [528..7] |
|
|
311.0 | [0..8] | [354..104] |
|
|
308.0 | [0..10] | [376..9] |
|
|
303.0 | [0..10] | [515..76] |
|
Region A: Residues: [1-379] |
1 11 21 31 41 51
| | | | | |
1 MDNANCVGGC KFETRSFQYR RRIPYSLGAD PLPPVHPLSL KNLVDIDTDL ISSQLYELYD 60
61 SIILNDSGLE RRYAFVQKLE QILKKEFPYK NIKTSLFGST QSLLASNASD IDLCIITDPP 120
121 QCAPTTCEVS AAFARNGLKK VVCISTAKVP IVKVWDSELQ LSCDCNINKT ISTLNTRLMR 180
181 SYVLCDPRVR PLIVMIKYWA KRRCLNDAAE GGTLTSYTIS CMVINFLQKR DPPILPSLQM 240
241 LPHLQDSSTM TDGLDVSFFD DPDLVHGFGD KNEESLGILF VEFFRFFGYL FDYEHFVLSI 300
301 RHGTFLSKRA KGWQFQLNNF LCVEEPFHTS RNLANTADEI TMKGIQLEFR RVFRLLAYNC 360
361 NVDDACSQFT FPSLTDTSF
|
| Detection Method: |  |
| Confidence: | 62.154902 |
| Match: | 1f5aA |
| Description: | Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleotidyltransferase activity | 3.46129595952031 | bayes_pls_golite062009 |
| RNA binding | 2.46555984694381 | bayes_pls_golite062009 |
| nucleic acid binding | 2.23030107200799 | bayes_pls_golite062009 |
| DNA binding | 1.74355603868839 | bayes_pls_golite062009 |
| binding | 1.48092751553298 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.40840262614509 | bayes_pls_golite062009 |
| polynucleotide adenylyltransferase activity | 1.24026612395993 | bayes_pls_golite062009 |
| transferase activity | 1.1355378442847 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.920730104361505 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 0.913497340211638 | bayes_pls_golite062009 |
| catalytic activity | 0.75232920999699 | bayes_pls_golite062009 |
| transcription factor binding | 0.283742101207206 | bayes_pls_golite062009 |
| protein binding | 0.117945573723438 | bayes_pls_golite062009 |
|
Region A: Residues: [380-578] |
1 11 21 31 41 51
| | | | | |
1 MDDYVNELQL EIVPGFSHGR DSSDTSCTES PPEPSHFAWA FDPYNATASP YYNQNINSSI 60
61 DYSSIYSNDV PAIPPNVPYT FVDPYTYACY INNNSYLPPS YMDFYTWYNS PYPKSSHHFD 120
121 ERHGGDRHEK NLSNSRRYSR NKFHKKKQSS GPFQYYPDAF SFTPTDNNSP PSNSSSSEVV 180
181 SPVSLHSEPV LSTVQAFKS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
