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Protein Overview: Cap-PA

General Information:
Name(s) found: Cap-PA / FBpp0074065 [FlyBase]
Description(s) found:
Found 20 descriptions.
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  • The gene Chromosome-associated protein is referred to in FlyBase by the symbol Dmel\Cap (CG9802, FBgn0015615). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:16483035..16487462. It has the cytological map location 14F1. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: protein binding; ATP binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: sister chromatid cohesion. 4 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1200 amino acids

    Gene Ontology:
    Cellular Component: cohesin complex [ISS][NAS]
    Biological Process: sister chromatid cohesion [ISS]
    Molecular Function: ATP binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHIKQIIIQG FKSYKDQTVV EPFDKRHNVV VGRNGSGKSN FFYAIQFVLS DEFTHLRPEQ  60
   61 RQSLLHEGTG ARVISAYVEI IFDNSDNRVP IDKEEIFLRR VIGAKKDQYF LNKKVVPRNE 120
  121 VVNLLESAGF SSSNPYYIVK QGKINQMATA ADSYRLKLLR EVAGTRVYDE RKEESLNLLR 180
  181 ETDSKVEKIS EYLKTIEDRL QTLEEEKEEL KEYQKWDKTR RTLEYIRYET ELKDTKKALD 240
  241 ELQLQRKSSS DKKKIYNIEI QKAQEKIKDV QKNLKEAKKK VQSTKEERSV LMTEQQQLLR 300
  301 EKTKLDLTIV DLNDEVQGDN KSKERADQEL KNLKVTIAER EKELDDVKPK YEAMKRKEED 360
  361 CSRELQLKEQ KRKELYAKQG RGSQFSSRED RDKWITNELK SISKQTRDKI AHHAKLVEDL 420
  421 KKDATSEKDL GQKIEEHSSE LEQLRLQIDE HNKKYYELKK TKDQHQSMRN ELWRKETQMT 480
  481 QQLQTHKEEL SRADQALRSM AGKPILNGCD SVRKVLDSFV ERGGQSAEIA RAYYGPVIEN 540
  541 FSCDKTIYTA VEVTAANRLF HHIVESEYEG TQILKEMNKL KLPGEVTFMP LNRLQVKIHD 600
  601 YPDDPDSIPM ISKLKYDEQH DKALRYIFGK TLICRNLERA TELAKSTGLD CVTLDGDQVS 660
  661 SKGSLTGGYF NTSRSRLEMQ KKRTEYTSQI AEFEKKLSKL RNELKSTENN INSIVSEMQK 720
  721 TETKQGKSKD VFEKVQGEIR LMKEELVRIE QYRAPKERSL AQCKASLESM TSTKSSLEAE 780
  781 LKQELMSTLS SQDQREIDQL NDDIRRLNQE NKEAFTQRMQ FEVRKNKLDN LLINNLFRRR 840
  841 DELIQALQEI SVEDRKRKLN NCKTELVSAE KRIKKVNSDL EEIEKRVMEA VQLQKELQQE 900
  901 LETHVRKEKE AEENLNKDSK QLEKWSTKEN MLNEKIDECT EKIASLGAVP LVDPSYTRMS 960
  961 LKNIFKELEK ANQHLKKYNH VNKKALDQFL SFSEQKEKLY RRKEELDIGD QKIHMLIQSL1020
 1021 EMQKVEAIQF TFRQVAQNFT KVFKKLVPMG AGFLILKTKD NEGDEMEKEV ENSDAFTGIG1080
 1081 IRVSFTGVEA EMREMNQLSG GQKSLVALAL IFSIQKCDPA PFYLFDEIDQ ALDAMHRKAV1140
 1141 ANMIHELSDT AQFITTTFRP ELLENAHKFY GVRFRNKVSH IDCVTREEAK DFVEDDSTHA1200
 1201

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..87] PSI-BLAST 39.522879 Structural biochemistry of ATP-driven dimerization and DNA stimulated activation of SMC ATPases.
    2 View Details [88..417] PSI-BLAST 11.154902 Heavy meromyosin subfragment
    3 View Details [418..454] PSI-BLAST 4.39794 No description for 2i1jA was found.
    4 View Details [455..690] FFAS03 4.69 Smc hinge domain
    5 View Details [691..1021] FFAS03 2.42 Tropomyosin
    6 View Details [1022..1200] PSI-BLAST 16.69897 Structural biochemistry of ATP-driven dimerization and DNA stimulated activation of SMC ATPases.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  2.91859588671053 bayes_pls_golite062009
  • protein heterodimerization activity
    		•  1.04211475755928 bayes_pls_golite062009
  • protein binding
    		•  1.02696508439754 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.832846345187777 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.76561882762468 bayes_pls_golite062009
  • protein dimerization activity
    		•  0.734314999998814 bayes_pls_golite062009
  • DNA binding
    		•  0.693468729072494 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.489361130553895 bayes_pls_golite062009
  • DNA secondary structure binding
    		•  0.370893450957454 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.299763949828861 bayes_pls_golite062009
  • catalytic activity
    		•  0.265320175609019 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.248383422632029 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.235472660839816 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.233111707634177 bayes_pls_golite062009
  • ATP binding
    		•  0.161090462621035 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.132019153736693 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.123699115804833 bayes_pls_golite062009
  • ATPase activity
    		•  0.08869715759545 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.00495036379814584 bayes_pls_golite062009
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle