YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: rap-PB, rap-PA

General Information:
Name(s) found: rap-PB / FBpp0070655 [FlyBase]
rap-PA / FBpp0070654 [FlyBase]
Description(s) found:
Found 37 descriptions.
SHOW ALL
  • The gene retina aberrant in pattern is referred to in FlyBase by the symbol Dmel\rap (CG3000, FBgn0003200). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:4561315..4573619. It has the cytological map location 4C11-4C12. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: cyclin catabolic process; positive regulation of exit from mitosis; glial cell migration; eye-antennal disc morphogenesis; protein catabolic process; compound eye morphogenesis. 24 alleles are reported. The phenotypes of these alleles are annotated with 17 unique terms, many of which group under: external compound sense organ; peripheral nervous system; nervous system; compound cell cluster organ; organ system; embryonic pericardial cell; morphogenetic furrow; primordium; extended germ band embryo; developing anatomical structure. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • The gene retina aberrant in pattern is referred to in FlyBase by the symbol Dmel\rap (CG3000, FBgn0003200). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:4561315..4573619. It has the cytological map location 4C11-4C12. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: cyclin catabolic process; positive regulation of exit from mitosis; glial cell migration; eye-antennal disc morphogenesis; protein catabolic process; compound eye morphogenesis. 24 alleles are reported. The phenotypes of these alleles are annotated with 17 unique terms, many of which group under: external compound sense organ; peripheral nervous system; nervous system; compound cell cluster organ; organ system; embryonic pericardial cell; morphogenetic furrow; primordium; extended germ band embryo; developing anatomical structure. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 478 amino acids

    Gene Ontology:
    Cellular Component: centrosome [IDA]
    centriole [IDA]
    spindle [IDA]
    Biological Process: positive regulation of exit from mitosis [IMP]
    compound eye morphogenesis [IMP]
    cyclin catabolic process [IDA]
    protein catabolic process [IMP]
    eye-antennal disc morphogenesis [IMP]
    glial cell migration [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSPEYEKRI LKHYSPVARN LFNNFESSTT PTSLDRFIPC RAYNNWQTNF ASINKSNDNS  60
   61 PQTSKKQRDC GETARDSLAY SCLLKNELLG SAIDDVKTAG EERNENAYTP AAKRSLFKYQ 120
  121 SPTKQDYNGE CPYSLSPVSA KSQKLLRSPR KATRKISRIP FKVLDAPELQ DDFYLNLVDW 180
  181 SSQNVLAVGL GSCVYLWSAC TSQVTRLCDL SPDANTVTSV SWNERGNTVA VGTHHGYVTV 240
  241 WDVAANKQIN KLNGHSARVG ALAWNSDILS SGSRDRWIIQ RDTRTPQLQS ERRLAGHRQE 300
  301 VCGLKWSPDN QYLASGGNDN RLYVWNQHSV NPVQSYTEHM AAVKAIAWSP HHHGLLASGG 360
  361 GTADRCIRFW NTLTGQPMQC VDTGSQVCNL AWSKHSSELV STHGYSQNQI LVWKYPSLTQ 420
  421 VAKLTGHSYR VLYLALSPDG EAIVTGAGDE TLRFWNVFSK ARSQKENKSV LNLFANIR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..112] PSI-BLAST 5.522879 No description for 2ojhA was found.
    2 View Details [113..478] PSI-BLAST 77.154902 PAF-AH Holoenzyme: Lis1/Alfa2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  7.6976390971701 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  7.38724968585043 bayes_pls_golite062009
    		• 6.67009948605948 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  6.41826641115519 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  5.36089569430187 bayes_pls_golite062009
  • RNA binding
    		•  3.77273677738815 bayes_pls_golite062009
  • GTPase activity
    		•  3.20623818975951 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  3.1056443224755 bayes_pls_golite062009
  • tubulin binding
    		•  2.76945430061825 bayes_pls_golite062009
  • microtubule binding
    		•  2.72684103222924 bayes_pls_golite062009
  • dynein binding
    		•  2.54821997913979 bayes_pls_golite062009
  • binding
    		•  2.42570478946173 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.3610959773142 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.30918780727915 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.29049708962212 bayes_pls_golite062009
  • actin binding
    		•  2.27900251096697 bayes_pls_golite062009
  • snoRNA binding
    		•  2.27164613239345 bayes_pls_golite062009
  • protein binding
    		•  2.26925404328312 bayes_pls_golite062009
  • ligase activity
    		•  1.82531515493699 bayes_pls_golite062009
  • DNA binding
    		•  1.71685536470455 bayes_pls_golite062009
  • structural molecule activity
    		•  1.47097979074281 bayes_pls_golite062009
  • transcription corepressor activity
    		•  1.41752877005447 bayes_pls_golite062009
  • receptor activity
    		•  1.12819778129653 bayes_pls_golite062009
  • transcription factor activity
    		•  1.08768505897883 bayes_pls_golite062009
  • mRNA binding
    		•  1.05053985350578 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.974380908248463 bayes_pls_golite062009
  • signal transducer activity
    		•  0.974380908248463 bayes_pls_golite062009
  • angiotensin receptor binding
    		•  0.920323565472959 bayes_pls_golite062009
  • type 1 angiotensin receptor binding
    		•  0.920323565472959 bayes_pls_golite062009
  • transporter activity
    		•  0.807925044108643 bayes_pls_golite062009
  • dynactin binding
    		•  0.71086831563355 bayes_pls_golite062009
  • G-protein-coupled receptor binding
    		•  0.700626674902544 bayes_pls_golite062009
  • actin filament binding
    		•  0.554537899540618 bayes_pls_golite062009
  • transcription factor binding
    		•  0.489473003915035 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.426429095658617 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.414491774707324 bayes_pls_golite062009
  • kinase activity
    		•  0.387572734234845 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.30761651528651 bayes_pls_golite062009
  • protein kinase activity
    		•  0.229242350006544 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.226335610368636 bayes_pls_golite062009
  • hydrolase activity
    		•  0.181211933860468 bayes_pls_golite062009
  • histone binding
    		•  0.166694897714113 bayes_pls_golite062009
  • structural constituent of cytoskeleton
    		•  0.118975415284669 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.116261617458825 bayes_pls_golite062009
  • receptor binding
    		•  0.0390635451962911 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle