YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CG5808-PA

General Information:
Name(s) found: CG5808-PA / FBpp0084113 [FlyBase]
Description(s) found:
Found 21 descriptions.
SHOW ALL
  • This gene is referred to in FlyBase by the symbol Dmel\CG5808 (CG5808, FBgn0027617). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:20640625..20642729. It has the cytological map location 96A23. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: protein folding. 5 alleles are reported. The phenotype of these alleles is annotated with: adult thorax. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 653 amino acids

    Gene Ontology:
    Cellular Component: catalytic step 2 spliceosome [IDA]
    precatalytic spliceosome [IDA]
    Biological Process: protein folding [IEA]
    nuclear mRNA splicing, via spliceosome [IC]
    Molecular Function: nucleic acid binding [IEA]
    nucleotide binding [IEA]
    peptidyl-prolyl cis-trans isomerase activity [IEA]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVIETTMG DLTVDLFISE RPIACLNFLK LCRLKYYNFN LFHTVQQGFI AQTGDPSGAG  60
   61 DGGSSIWGVV EGPQKRFFEA EFLPKINHSS AGMLSLVSAG KNLVGSQFFL TLGENLTSLD 120
  121 GNHCVIGEVV EGHEVLRKLN DAIVDDSFRP YQDIRITHTV VLEDPFPNPR GLQAPSRSPS 180
  181 PSAERLKNGR IAADEDIDDT DGMTAEEMQE MLAEREAKAR ATILEIVGDL PDADMAPPEN 240
  241 VLFVCKLNPV TTDDDLEIIF SSFGVLKGCE VIRDRKTGDS LQYAFVEFED QKSCEAAYFK 300
  301 MDNVLIDDRR IHVDFSQSVS KVTWRGKGRG IEGDYRKLDF NNLRDDKDHR KPNNGRSRTE 360
  361 DHKERNRTED FRNRMSSAER RKAREQRHQE QSERDVRKNL QRRTRSKEKD EKSVYRSKKS 420
  421 QNESVRENSN RERNRNEKRS SRSRDATHRR YSRSRDREER RPSRPRDQLG RRSRSRDQKE 480
  481 RRRSRPREQN ERRRSRSRDQ TGKRPTQNRD RNDSRRFHSP QEGRRNDERS HRETSRNQRR 540
  541 SPERRQQSRN REDHRMDTHS SPNKSHEKKR KLSVEKSKKQ AKKSKRAASS SSDSSESSSE 600
  601 SESDSTSSDS SEDSSSSSSS SDDRSKRKKS TKSKQKKSKS KSSHKSKKKH NRN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..164] PSI-BLAST 66.09691 Crystal Structure of Recombinant Human Cyclophilin J
    2 View Details [165..324] FFAS03 4.45 Hu antigen C (Huc)
    3 View Details [325..471] deduced N/A No confident structure predictions are available.
    4 View Details [472..653] MSA 4.175995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • peptidyl-prolyl cis-trans isomerase activity
    		•  3.73853378771688 bayes_pls_golite062009
  • cis-trans isomerase activity
    		•  3.66963215732405 bayes_pls_golite062009
  • isomerase activity
    		•  1.96529188741504 bayes_pls_golite062009
  • binding
    		•  1.46018233647024 bayes_pls_golite062009
  • unfolded protein binding
    		•  1.38124355054041 bayes_pls_golite062009
  • catalytic activity
    		•  0.748655649755714 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.426463143591006 bayes_pls_golite062009
  • protein binding
    		•  0.130251391659493 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  3.28185713569553 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.0372165500396 bayes_pls_golite062009
  • RNA binding
    		•  2.06552837244801 bayes_pls_golite062009
  • protein binding
    		•  0.958228859356026 bayes_pls_golite062009
  • mRNA binding
    		•  0.880500251455587 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.258874009112248 bayes_pls_golite062009
  • DNA binding
    		•  0.208935674354032 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle