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Protein Overview: mRpS17-PA

General Information:
Name(s) found: mRpS17-PA / FBpp0072184 [FlyBase]
Description(s) found:
Found 22 descriptions.
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  • The gene mitochondrial ribosomal protein S17 is referred to in FlyBase by the symbol Dmel\mRpS17 (CG4326, FBgn0034986). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:20061187..20061958. It has the cytological map location 60C1. Based on sequence similarity, it is predicted to have molecular function</span>: structural constituent of ribosome. Based on sequence similarity, it is predicted to be involved in the biological process</span>: translation. 5 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 155 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA]
    mitochondrial small ribosomal subunit [ISS]
    Biological Process: transmembrane transport [IEA]
    translation [ISS]
    Molecular Function: structural constituent of ribosome [ISS]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRRGLLLMG QCMPCIKQNA SKIRIRRMEL DKNLNMYFKK DEFYFAHDPQ KVCKTGDVVL  60
   61 IRELPERLTR LITHNVEKVV YPLGDITDPL TGKKVVVGNY REDIEMANQL FGKSEKAFDY 120
  121 EKAPPRGRLE GTKDFTHGET YIKYHEDGKD QPFAV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..155] PSI-BLAST 27.0 No description for 1vs5Q was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  7.45319063235379 bayes_pls_golite062009
  • structural molecule activity
    		•  6.87843523680097 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69275272183315 bayes_pls_golite062009
  • DNA binding
    		•  1.97161900822354 bayes_pls_golite062009
  • binding
    		•  1.81248034004657 bayes_pls_golite062009
  • RNA binding
    		•  1.76502371106766 bayes_pls_golite062009
  • translation regulator activity
    		•  1.46320772716954 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  1.40718318783582 bayes_pls_golite062009
  • translation initiation factor activity
    		•  1.27539679024898 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.83151863389272 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.72238927168323 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.474251377131502 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.47336621289748 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.47336621289748 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.157816897728538 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  0.1542034177713 bayes_pls_golite062009
  • RNA polymerase activity
    		•  0.1542034177713 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.0760793505650201 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.48

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle