YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpS17-PA
Organism:	Drosophila melanogaster
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpS17-PA.

Description	E-value	Query Range	Subject Range
AGAP005118-PA - mRpS17: 28S ribosomal protein S17, mitochondrial\|protein_coding\|2L:10244744:10245281:1\|gene:AGAP0051... gi\|58385507, gi\|... - gi\|58385507\|ref\|XP_313999.2\| AGAP005118-PA [Anopheles gambiae str. PEST], gi\|55240503\|gb\|EAA09413.2\|...	196.0	[0..1]	[155..1]
gi\|195153791, gi... - gi\|195153791\|ref\|XP_002017807.1\| GL17109 [Drosophila persimilis], gi\|194113603\|gb\|EDW35646.1\| GL1710... gi\|54636081, gi\|... - gi\|54636081\|gb\|EAL25484.1\| GA18111 [Drosophila pseudoobscura pseudoobscura], gi\|125808890\|ref\|XP_001... gi\|125808890\|ref... - GA18111-PA [Drosophila pseudoobscura], GA18111 [Drosophila pseudoobscura pseudoobscura]	191.0	[0..1]	[155..1]
gi\|94469324 - gi\|94469324\|gb\|ABF18511.1\| mitochondrial ribosomal protein S17 [Aedes aegypti]	185.0	[0..1]	[155..1]
gi\|3694661 - gi\|3694661\|gb\|AAC62432.1\| carrier protein-like; similar to Q01888 (PID:g266574) [Homo sapiens]	157.0	[0..1]	[127..6]
gi\|114689975 - gi\|114689975\|ref\|XP_001136991.1\| PREDICTED: hypothetical protein [Pan troglodytes]	134.0	[0..1]	[116..6]
gi\|91087591 - gi\|91087591\|ref\|XP_972027.1\| PREDICTED: similar to GA18111-PA [Tribolium castaneum]	134.0	[0..7]	[155..11]
ENSPTRT00000035492 - null gi\|109066482 - gi\|109066482\|ref\|XP_001090330.1\| PREDICTED: mitochondrial ribosomal protein S17 [Macaca mulatta]	132.0	[0..2]	[116..7]
gi\|109495698, gi... - ref\|XP_213762.2\| similar to mitochondrial ribosomal protein S17 [Rattus norvegicus], gi\|109495698\|re...	130.0	[0..2]	[115..162]

Back

Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRRGLLLMG QCMPCIKQNA SKIRIRRMEL DKNLNMYFKK DEFYFAHDPQ KVCKTGDVVL  60
   61 IRELPERLTR LITHNVEKVV YPLGDITDPL TGKKVVVGNY REDIEMANQL FGKSEKAFDY 120
  121 EKAPPRGRLE GTKDFTHGET YIKYHEDGKD QPFAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	1vs5Q
Description:	No description for 1vs5Q was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	7.45319063235379	bayes_pls_golite062009
structural molecule activity	6.87843523680097	bayes_pls_golite062009
nucleic acid binding	2.69275272183315	bayes_pls_golite062009
DNA binding	1.97161900822354	bayes_pls_golite062009
binding	1.81248034004657	bayes_pls_golite062009
RNA binding	1.76502371106766	bayes_pls_golite062009
translation regulator activity	1.46320772716954	bayes_pls_golite062009
translation factor activity, nucleic acid binding	1.40718318783582	bayes_pls_golite062009
translation initiation factor activity	1.27539679024898	bayes_pls_golite062009
structure-specific DNA binding	0.83151863389272	bayes_pls_golite062009
single-stranded DNA binding	0.72238927168323	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	0.474251377131502	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	0.47336621289748	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	0.47336621289748	bayes_pls_golite062009
transcription regulator activity	0.157816897728538	bayes_pls_golite062009
DNA-directed RNA polymerase activity	0.1542034177713	bayes_pls_golite062009
RNA polymerase activity	0.1542034177713	bayes_pls_golite062009
ribonuclease activity	0.0760793505650201	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: