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Protein Overview: apt-PC, apt-PA, ...

General Information:
Name(s) found: apt-PA / FBpp0071979 [FlyBase]
apt-PC / FBpp0071978 [FlyBase]
apt-PD / FBpp0071976 [FlyBase]
Description(s) found:
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  • gi|2981216|gb|AAC06253.1| apontic [Drosophila melanogaster] [NCBI NR]
  • gi|24762333|ref|NP_726343.1| apontic, isoform D [Drosophila melanogaster] [NCBI NR]
  • gi|24762330|ref|NP_726342.1| apontic, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|21626640|gb|AAM68257.1| apontic, isoform D [Drosophila melanogaster] [NCBI NR]
  • gi|21626639|gb|AAM68256.1| apontic, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|21626638|gb|AAM68255.1| apontic, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|17137236|ref|NP_477180.1| apontic, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|16769644|gb|AAL29041.1| LD45581p [Drosophila melanogaster] [NCBI NR]
  • The gene apontic is referred to in FlyBase by the symbol Dmel\apt (CG5393, FBgn0015903). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:19452420..19487223. It has the cytological map location 59F1-59F4. There is experimental evidence that it has the molecular function</span>: transcription factor activity; protein binding; sequence-specific DNA binding; transcription activator activity. There is experimental evidence that it is involved in the biological process</span>: central nervous system development; neuromuscular synaptic transmission; positive regulation of transcription from RNA polymerase II promoter; open tracheal system development. 65 alleles are reported. The phenotypes of these alleles are annotated with 20 unique terms, many of which group under: organ system; nervous system; cephalopharyngeal skeleton; peripheral nervous system; embryonic nervous system; adult segment; cuticle; pharyngeal sclerite; adult mesothoracic segment; embryonic/larval dorsal vessel; portion of tissue. It has 5 annotated transcripts and 5 annotated polypeptides. [FlyBase]
  • >CG5393-PA translation from_gene[CG5393 apt FBgn0015903] seq_release:3 mol_weight=54548 cds_boundaries:(2R:18,625,034..18,642,092[+]) aa_length:483 transcript_info:[CG5393-RA seq_release:3] gene_info:[gene symbol:apt FBgn0015903 gene_boundaries:(2R:18, [hmr_yeast5_DM3-1_pombe.fasta]
  • >CG5393-PC translation from_gene[CG5393 apt FBgn0015903] seq_release:3 mol_weight=54548 cds_boundaries:(2R:18,611,958..18,642,092[+]) aa_length:483 transcript_info:[CG5393-RC seq_release:3] gene_info:[gene symbol:apt FBgn0015903 gene_boundaries:(2R:18, [hmr_yeast5_DM3-1_pombe.fasta]
  • >CG5393-PD translation from_gene[CG5393 apt FBgn0015903] seq_release:3 mol_weight=54548 cds_boundaries:(2R:18,625,034..18,642,092[+]) aa_length:483 transcript_info:[CG5393-RD seq_release:3] gene_info:[gene symbol:apt FBgn0015903 gene_boundaries:(2R:18, [hmr_yeast5_DM3-1_pombe.fasta]
  • (O61602) APONTIC (LD45581P) (CG5393-PC) (CG5393-PA) [DrosMelano7227.FASTAC.txt]
  • CG5393-PD, isoform D [Drosophila melanogaster]gi|21626639|gb|AAM68256.1| CG5393-PA, isoform A [Drosophila melanogaster]gi|21626638|gb|AAM68255.1| CG5393-PC, isoform C [Drosophila melanogaster]gi|16769644|gb|AAL29041.1| LD45581p [Drosophila melanogaster [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:join(19468989..19468991,19484415..19484520,19484583..19484843,19484907..19485153,19485216..19486050); ID=FBpp0071976; name=apt-PD; parent=FBgn0015903,FBtr0072067; dbxref=FlyBase:FBpp0071976,FlyBase_Annotation_IDs:CG5393-PD,GB_protein: [fly-100309-contam.fasta]
  • type=protein; loc=2R:join(19455913..19455915,19484415..19484520,19484583..19484843,19484907..19485153,19485216..19486050); ID=FBpp0071978; name=apt-PC; parent=FBgn0015903,FBtr0072069; dbxref=FlyBase:FBpp0071978,FlyBase_Annotation_IDs:CG5393-PC,GB_protein: [fly-100309-contam.fasta]
  • type=protein; loc=2R:join(19468989..19468991,19484415..19484520,19484583..19484843,19484907..19485153,19485216..19486050); ID=FBpp0071979; name=apt-PA; parent=FBgn0015903,FBtr0072070; dbxref=FlyBase:FBpp0071979,FlyBase_Annotation_IDs:CG5393-PA,GB_protein: [fly-100309-contam.fasta]
  • CG5393-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • apontic CG5393-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • apontic CG5393-PD, isoform D [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG5393-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG5393-PD, isoform D [Drosophila melanogaster] [nr-271106-contam.fasta]
  • LD45581p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • apontic [Drosophila melanogaster] [nr-271106-contam.fasta]
  • apontic CG5393-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:join(19468989..19468991,19484415..19484520,19484583..19484843,19484907..19485153,19485216..19486050); ID=FBpp0071976; name=apt-PD; parent=FBgn0015903,FBtr0072067; dbxref=FlyBase:FBpp0071976,FlyBase_Annotation_IDs:CG5393-PD,GB_protein:AAM68257.1,REFSEQ:NP_726343,GB_protein:AAM68257; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(19455913..19455915,19484415..19484520,19484583..19484843,19484907..19485153,19485216..19486050); ID=FBpp0071978; name=apt-PC; parent=FBgn0015903,FBtr0072069; dbxref=FlyBase:FBpp0071978,FlyBase_Annotation_IDs:CG5393-PC,GB_protein:AAM68255.1,REFSEQ:NP_726342,GB_protein:AAM68255; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(19468989..19468991,19484415..19484520,19484583..19484843,19484907..19485153,19485216..19486050); ID=FBpp0071979; name=apt-PA; parent=FBgn0015903,FBtr0072070; dbxref=FlyBase:FBpp0071979,FlyBase_Annotation_IDs:CG5393-PA,GB_protein:AAM68256.1,REFSEQ:NP_477180,GB_protein:AAM68256; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(19468989..19468991,19484415..19484520,19484583..19484843,19484907..19485153,19485216..19486050); ID=FBpp0071976; name=apt-PD; parent=FBgn0015903,FBtr0072067; dbxref=FlyBase:FBpp0071976,FlyBase_Annotation_IDs:CG5393-PD,GB_protein:AAM68257.1,REFSEQ:NP_726343,GB_protein:AAM68257; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2R:join(19455913..19455915,19484415..19484520,19484583..19484843,19484907..19485153,19485216..19486050); ID=FBpp0071978; name=apt-PC; parent=FBgn0015903,FBtr0072069; dbxref=FlyBase:FBpp0071978,FlyBase_Annotation_IDs:CG5393-PC,GB_protein:AAM68255.1,REFSEQ:NP_726342,GB_protein:AAM68255; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2R:join(19468989..19468991,19484415..19484520,19484583..19484843,19484907..19485153,19485216..19486050); ID=FBpp0071979; name=apt-PA; parent=FBgn0015903,FBtr0072070; dbxref=FlyBase:FBpp0071979,FlyBase_Annotation_IDs:CG5393-PA,GB_protein:AAM68256.1,REFSEQ:NP_477180,GB_protein:AAM68256; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Apontic OS=Drosophila melanogaster GN=apt PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:join(19468989..19468991,19484415..19484520,19484583..19484843,19484907..19485153,19485216..19486050); ID=FBpp0071976; name=apt-PD; parent=FBgn0015903,FBtr0072067; dbxref=FlyBase:FBpp0071976,FlyBase_Annotation_IDs:CG5393-PD,GB_protein:AAM68257.1,REFSEQ:NP_726343,GB_protein:AAM68257; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:join(19455913..19455915,19484415..19484520,19484583..19484843,19484907..19485153,19485216..19486050); ID=FBpp0071978; name=apt-PC; parent=FBgn0015903,FBtr0072069; dbxref=FlyBase:FBpp0071978,FlyBase_Annotation_IDs:CG5393-PC,GB_protein:AAM68255.1,REFSEQ:NP_726342,GB_protein:AAM68255; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:join(19468989..19468991,19484415..19484520,19484583..19484843,19484907..19485153,19485216..19486050); ID=FBpp0071979; name=apt-PA; parent=FBgn0015903,FBtr0072070; dbxref=FlyBase:FBpp0071979,FlyBase_Annotation_IDs:CG5393-PA,GB_protein:AAM68256.1,REFSEQ:NP_477180,GB_protein:AAM68256,FlyMine:FBpp0071979,modMine:FBpp0071979; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:join(23581466..23581468,23596892..23596997,23597060..23597320,23597384..23597630,23597693..23598527); ID=FBpp0071976; name=apt-PD; parent=FBgn0015903,FBtr0072067; dbxref=FlyBase:FBpp0071976,FlyBase_Annotation_IDs:CG5393-PD,GB_protein:AAM68257.1,REFSEQ:NP_726343,GB_protein:AAM68257; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(23568390..23568392,23596892..23596997,23597060..23597320,23597384..23597630,23597693..23598527); ID=FBpp0071978; name=apt-PC; parent=FBgn0015903,FBtr0072069; dbxref=FlyBase:FBpp0071978,FlyBase_Annotation_IDs:CG5393-PC,GB_protein:AAM68255.1,REFSEQ:NP_726342,GB_protein:AAM68255; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(23581466..23581468,23596892..23596997,23597060..23597320,23597384..23597630,23597693..23598527); ID=FBpp0071979; name=apt-PA; parent=FBgn0015903,FBtr0072070; dbxref=FlyBase:FBpp0071979,FlyBase_Annotation_IDs:CG5393-PA,GB_protein:AAM68256.1,REFSEQ:NP_477180,GB_protein:AAM68256,FlyMine:FBpp0071979,modMine:FBpp0071979; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(23581466..23581468,23596892..23596997,23597060..23597320,23597384..23597630,23597693..23598527); ID=FBpp0071976; name=apt-PD; parent=FBgn0015903,FBtr0072067; dbxref=FlyBase:FBpp0071976,FlyBase_Annotation_IDs:CG5393-PD,GB_protein:AAM68257.1,REFSEQ:NP_726343,GB_protein:AAM68257; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2R:join(23568390..23568392,23596892..23596997,23597060..23597320,23597384..23597630,23597693..23598527); ID=FBpp0071978; name=apt-PC; parent=FBgn0015903,FBtr0072069; dbxref=FlyBase:FBpp0071978,FlyBase_Annotation_IDs:CG5393-PC,GB_protein:AAM68255.1,REFSEQ:NP_726342,GB_protein:AAM68255; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2R:join(23581466..23581468,23596892..23596997,23597060..23597320,23597384..23597630,23597693..23598527); ID=FBpp0071979; name=apt-PA; parent=FBgn0015903,FBtr0072070; dbxref=FlyBase:FBpp0071979,FlyBase_Annotation_IDs:CG5393-PA,GB_protein:AAM68256.1,REFSEQ:NP_477180,GB_protein:AAM68256,FlyMine:FBpp0071979,modMine:FBpp0071979; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of A0A0B4KGD0, Apontic OS=Drosophila melanogaster GN=apt PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0071976 type=protein; loc=2R:join(23581466..23581468,23596892..23596997,23597060..23597320,23597384..23597630,23597693..23598527); ID=FBpp0071976; name=apt-PD; parent=FBgn0015903,FBtr0072067; dbxref=FlyBase:FBpp0071976,FlyBase_Annotation_IDs:CG5393-PD,GB_protein:AAM68257.1,REFSEQ:NP_726343,GB_protein:AAM68257; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0071978 type=protein; loc=2R:join(23568390..23568392,23596892..23596997,23597060..23597320,23597384..23597630,23597693..23598527); ID=FBpp0071978; name=apt-PC; parent=FBgn0015903,FBtr0072069; dbxref=FlyBase:FBpp0071978,FlyBase_Annotation_IDs:CG5393-PC,GB_protein:AAM68255.1,REFSEQ:NP_726342,GB_protein:AAM68255; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0071979 type=protein; loc=2R:join(23581466..23581468,23596892..23596997,23597060..23597320,23597384..23597630,23597693..23598527); ID=FBpp0071979; name=apt-PA; parent=FBgn0015903,FBtr0072070; dbxref=FlyBase:FBpp0071979,FlyBase_Annotation_IDs:CG5393-PA,GB_protein:AAM68256.1,REFSEQ:NP_477180,GB_protein:AAM68256,FlyMine:FBpp0071979,modMine:FBpp0071979; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:join(23581466..23581468,23596892..23596997,23597060..23597320,23597384..23597630,23597693..23598527); ID=FBpp0071976; name=apt-PD; parent=FBgn0015903,FBtr0072067; dbxref=FlyBase:FBpp0071976,FlyBase_Annotation_IDs:CG5393-PD,GB_protein:AAM68257.1,REFSEQ:NP_726343,GB_protein:AAM68257,UniProt/TrEMBL:O61602; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2R:join(23568390..23568392,23596892..23596997,23597060..23597320,23597384..23597630,23597693..23598527); ID=FBpp0071978; name=apt-PC; parent=FBgn0015903,FBtr0072069; dbxref=FlyBase:FBpp0071978,FlyBase_Annotation_IDs:CG5393-PC,GB_protein:AAM68255.1,REFSEQ:NP_726342,GB_protein:AAM68255,UniProt/TrEMBL:O61602; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2R:join(23581466..23581468,23596892..23596997,23597060..23597320,23597384..23597630,23597693..23598527); ID=FBpp0071979; name=apt-PA; parent=FBgn0015903,FBtr0072070; dbxref=FlyBase:FBpp0071979,FlyBase_Annotation_IDs:CG5393-PA,GB_protein:AAM68256.1,REFSEQ:NP_477180,GB_protein:AAM68256,UniProt/TrEMBL:O61602,FlyMine:FBpp0071979,modMine:FBpp0071979; MD5=b8f1ec80f26dfc38d15d8b8f940c8987; length=483; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 483 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: negative regulation of oskar mRNA translation [NAS][TAS]
    heart development [TAS]
    central nervous system development [IMP]
    primary branching, open tracheal system [TAS]
    neuromuscular synaptic transmission [IMP]
    positive regulation of transcription from RNA polymerase II promoter [IDA]
    regulation of transcription from RNA polymerase II promoter [NAS]
    open tracheal system development [IMP][TAS]
    Molecular Function: transcription factor activity [IDA]
    protein binding [IPI]
    RNA polymerase II transcription factor activity [NAS]
    mRNA binding [TAS]
    sequence-specific DNA binding [IDA]
    transcription activator activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNKQYSATD LEAFMKIAAN WQNSNHNLLE GVDIKTEMTQ YMNSPSMNMY KKRERTQNWN  60
   61 HQEKKYLLDL CRKDMRIIEN KRLDAGLTAV KNKAWKIIHQ KFSNQFGTDR TCNRLKEQWR 120
  121 RMKACTRNEI LDYNNRLARF GAEVADRKKP SPFTFEVWDF MQEAKKACKS EALDGIDYSK 180
  181 IPLALEEGFE YREDYKFNPE DHDMDDSRTP PQELCDVDIK EEENNETFNE TFNHHHLNQS 240
  241 DILGSGERLS VSPNHSISRN GIHEAESPAT ISTSNVLDSS GAYMAGGGDM SGFQANFNMN 300
  301 NISATLEALN ALRSGQFPSA AAAAAAAIHQ HQAQAQVAMH HQHNNNNNNN NNNEDDEDSM 360
  361 KPQSKRQRTS SGSMLGSEDQ APVLAPSVPA SSDSQALERS GSSNGLTMPG TAVSTNANSS 420
  421 SSNNNNFELR MFMEMQSKEH MMRMKILEVQ LQAAKHSRDL VEINKTLALQ KLQLELASKR 480
  481 LPS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..198] MSA 15.061997 View MSA. No confident structure predictions are available.
    2 View Details [199..254] MSA 2.033997 View MSA. No confident structure predictions are available.
    3 View Details [255..483] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle