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Protein Overview: gi|125559330

General Information:
Name(s) found: gi|125559330 [NCBI NR]
Description(s) found:
  • gi|125559330|gb|EAZ04866.1| hypothetical protein OsI_27045 [Oryza sativa Indica Group] [NCBI NR]
    • Organism: Oryza sativa Indica Group
    Length: 253 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTALACLAGK AISWSSGVKA AAGCGLGLLP QWRGVFRSVR MESGSSQGGR GALIVLEGLD  60
   61 RSGKSSQCAR LLSFLQGKGC QAEGWRFPDR GTSVGQMISA YLANESELDD RTIHLLFSAN 120
  121 RWEKRALMER KLLGGTTLIV DRYSYSGVAF SAAKGLDIEW CKAPENGLIA PDLVVYLDVQ 180
  181 PEKAAERGGY GGERYEKIEF QKKVGEHYHS LRDSTWKVVD GSLPMEVVEE QLKELAMSCI 240
  241 LECQSKQLAS LAW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..253] PSI-BLAST 38.30103 Thymidylate kinase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrogen ion transporting ATP synthase activity, rotational mechanism
    		•  3.01286198424677 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  2.06460241490722 bayes_pls_golite062009
  • binding
    		•  2.05253348982328 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.0114051513686 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.92626167278464 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  1.9136419736217 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  1.6854386921174 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  1.64467072658718 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  1.5008821138859 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.49633029954726 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.49611313354225 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.2155186842031 bayes_pls_golite062009
  • helicase activity
    		•  1.16085745407703 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • DNA binding
    		•  0.967303417236485 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.748437190903548 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.72881469450553 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.720649395550746 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.59513742813869 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.59513742813869 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.58862275163252 bayes_pls_golite062009
  • CTP synthase activity
    		•  0.435702031552231 bayes_pls_golite062009
  • protein-DNA loading ATPase activity
    		•  0.3625050107782 bayes_pls_golite062009
  • DNA clamp loader activity
    		•  0.27925703205288 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.22150712609541 bayes_pls_golite062009
  • protein binding
    		•  0.193768631623192 bayes_pls_golite062009
  • nucleobase, nucleoside, nucleotide kinase activity
    		•  0.12351419478929 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009
  • DNA polymerase activity
    		•  4.95561462330096E-4 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle