Protein Overview: CG9935-PC

General Information:
Name(s) found:	CG9935-PC / FBpp0110207 [FlyBase]
Description(s) found: SHOW ONLY BEST	gi\|116007114\|ref\|NP_001036251.1\| CG9935, isoform C [Drosophila melanogaster] [NCBI NR] gi\|112980802\|gb\|ABI29183.1\| CG9935, isoform C [Drosophila melanogaster] [NCBI NR] This gene is referred to in FlyBase by the symbol Dmel\CG9935 (CG9935, FBgn0039916). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 4:656751..667182. It has the cytological map location 102D1. Based on sequence similarity, it is predicted to have molecular function</span>: kainate selective glutamate receptor activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: ion transport. 4 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase] type=protein; loc=4:complement(656934..657093,657178..657244,659641..659829,659959..660160,660219..660674,660733..660837,660899..661102,661159..661362,662902..663054,663118..663354,664615..664781,666575..666808,666859..667020,667071..667146); ID=FBpp01102 [fly-100309-contam.fasta] CG9935-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta] type=protein; loc=4:complement(656934..657093,657178..657244,659641..659829,659959..660160,660219..660674,660733..660837,660899..661102,661159..661362,662902..663054,663118..663354,664615..664781,666575..666808,666859..667020,667071..667146); ID=FBpp0110207; name=CG9935-PC; parent=FBgn0039916,FBtr0110907; dbxref=FlyBase:FBpp0110207,FlyBase_Annotation_IDs:CG9935-PC,REFSEQ:NP_001036251,GB_protein:ABI29183; MD5=1591de17a071cd31af81844f8a0a6292; length=871; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta] type=protein; loc=4:complement(656934..657093,657178..657244,659641..659829,659959..660160,660219..660674,660733..660837,660899..661102,661159..661362,662902..663054,663118..663354,664615..664781,666575..666808,666859..667020,667071..667146); ID=FBpp0110207; name=CG9935-PC; parent=FBgn0039916,FBtr0110907; dbxref=FlyBase:FBpp0110207,FlyBase_Annotation_IDs:CG9935-PC,REFSEQ:NP_001036251,GB_protein:ABI29183; MD5=1591de17a071cd31af81844f8a0a6292; length=871; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta] CG9935, isoform C OS=Drosophila melanogaster GN=CG9935 PE=4 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta] type=protein; loc=4:complement(656934..657093,657178..657244,659641..659829,659959..660160,660219..660674,660733..660837,660899..661102,661159..661362,662902..663054,663118..663354,664615..664781,666575..666808,666859..667020,667071..667146); ID=FBpp0110207; name=CG9935-PC; parent=FBgn0039916,FBtr0110907; dbxref=FlyBase:FBpp0110207,FlyBase_Annotation_IDs:CG9935-PC,REFSEQ:NP_001036251,GB_protein:ABI29183,FlyMine:FBpp0110207,modMine:FBpp0110207; MD5=1591de17a071cd31af81844f8a0a6292; length=871; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
Organism:	Drosophila melanogaster
Length:	871 amino acids
Gene Ontology:
Cellular Component:	membrane [IEA]
Biological Process:	ion transport [IEA]
Molecular Function:	kainate selective glutamate receptor activity [ISS] extracellular-glutamate-gated ion channel activity [IEA] ionotropic glutamate receptor activity [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIASGFLLF QFLSYGLGVP PLVRIGAIFS NQPGMYNSEL AFRYAIHRLN MDKSLLPETT  60
   61 VDYYVEYVNR FDSFETVQKV CKLIRVGVQA VFSPTDSVLA THINSICDAL DIPNIGRSAH 120
  121 DFSINVYPSK QLVNYAFNDV IQYLNWTRFG ILHEKENGII NLHQLSRSFH GEVHMRQVSR 180
  181 DSYVSALNEF KGKEIHNIII DTNSNGISIL LKNILQQQMN EYKYHYLFTS FDLETYDLED 240
  241 FKYNFVNITS FRLVDTADVG VKQILKDIGL YSHHIFKKPY LNLHIKKSTI LESEPALMFD 300
  301 SVYVFAIGLQ TLEQSHSLTL LNISCEEENS WDGGLSLINY LNAVEWKGLT GPIQFKDGQR 360
  361 VQFKLDLIKL KQHSIVKVGE WTPHGHLNIT EPSMFFDAGS MNVTLVVITI LETPYVMMHY 420
  421 GKNFTGNERF YGFCVDILET ISREVGFDYI LDLVPDRKYG AKDPETGEWN GMVAQLMKYK 480
  481 ADLAVGSMTI TYARESVIDF TKPFMNLGIS ILFKVPTSEP TRLFSFMNPL AIEIWIYVLI 540
  541 AYFLVSLCIY IVGKLSPIEW KCINACDLEN ISIGNQFSLT DSFWFTIGTF MQQSPDIYPR 600
  601 AMSTRIISST WGFFSLIIVA SYTANLAAFL TTERMINPIE NAEDLASQTE ISYGTLDSGS 660
  661 TMTFFRDSVI ETYKKIWRSM DNKKPSAFTT TYEDGIKRVN QGNYAFLMES TMLDYIVQRD 720
  721 CNLTQIGGLL DTKGYGIATP KGSPWRDKIS LAILELQERG DIQMLYDKWW KNTDETCTRK 780
  781 NTSKQSKANS LGLESIGGVF VVLIAGIIVA AVVAFFEFCE RNYTPPDRSF WIEIAEELRY 840
  841 ASWCMNKQKR PALTRTCSKC TIPKGQRINK L

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..498]	PSI-BLAST	44.0	No description for 2e4uA was found.
2	View Details	[499..629]	FFAS03	1.3	Intermediate gating structure 1 of the inwardly rectifying K+ channel KirBac3.1
3	View Details	[630..871]	PSI-BLAST	30.522879	Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid

Protein Overview: CG9935-PC

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: