| Protein: | CG9935-PC |
| Organism: | Drosophila melanogaster |
| Length: | 871 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG9935-PC.
| Description | E-value | Query Range |
Subject Range |
|
|
547.0 | [0..6] | [860..19] |
|
Region A: Residues: [1-498] |
1 11 21 31 41 51
| | | | | |
1 MLIASGFLLF QFLSYGLGVP PLVRIGAIFS NQPGMYNSEL AFRYAIHRLN MDKSLLPETT 60
61 VDYYVEYVNR FDSFETVQKV CKLIRVGVQA VFSPTDSVLA THINSICDAL DIPNIGRSAH 120
121 DFSINVYPSK QLVNYAFNDV IQYLNWTRFG ILHEKENGII NLHQLSRSFH GEVHMRQVSR 180
181 DSYVSALNEF KGKEIHNIII DTNSNGISIL LKNILQQQMN EYKYHYLFTS FDLETYDLED 240
241 FKYNFVNITS FRLVDTADVG VKQILKDIGL YSHHIFKKPY LNLHIKKSTI LESEPALMFD 300
301 SVYVFAIGLQ TLEQSHSLTL LNISCEEENS WDGGLSLINY LNAVEWKGLT GPIQFKDGQR 360
361 VQFKLDLIKL KQHSIVKVGE WTPHGHLNIT EPSMFFDAGS MNVTLVVITI LETPYVMMHY 420
421 GKNFTGNERF YGFCVDILET ISREVGFDYI LDLVPDRKYG AKDPETGEWN GMVAQLMKYK 480
481 ADLAVGSMTI TYARESVI
|
| Detection Method: |  |
| Confidence: | 44.0 |
| Match: | 2e4uA |
| Description: | No description for 2e4uA was found. |
|
Region A: Residues: [499-629] |
1 11 21 31 41 51
| | | | | |
1 DFTKPFMNLG ISILFKVPTS EPTRLFSFMN PLAIEIWIYV LIAYFLVSLC IYIVGKLSPI 60
61 EWKCINACDL ENISIGNQFS LTDSFWFTIG TFMQQSPDIY PRAMSTRIIS STWGFFSLII 120
121 VASYTANLAA F
|
| Detection Method: | |
| Confidence: | 1.3 |
| Match: | 1xl4A |
| Description: | Intermediate gating structure 1 of the inwardly rectifying K+ channel KirBac3.1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| gated channel activity | 3.69159251802076 | bayes_pls_golite062009 |
| voltage-gated potassium channel activity | 3.44021953730907 | bayes_pls_golite062009 |
| potassium channel activity | 3.390404838627 | bayes_pls_golite062009 |
| voltage-gated cation channel activity | 3.03335269249917 | bayes_pls_golite062009 |
| voltage-gated ion channel activity | 2.97559865523675 | bayes_pls_golite062009 |
| substrate-specific channel activity | 2.97010589436002 | bayes_pls_golite062009 |
| channel activity | 2.96709641892817 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 2.96709641892817 | bayes_pls_golite062009 |
| voltage-gated channel activity | 2.95293713789301 | bayes_pls_golite062009 |
| cation channel activity | 2.93137972840708 | bayes_pls_golite062009 |
| ion channel activity | 2.90649323275732 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 2.79927269240187 | bayes_pls_golite062009 |
| transporter activity | 2.77619896060397 | bayes_pls_golite062009 |
| transmembrane transporter activity | 2.65613366364107 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.60593795082679 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 2.51155410430955 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 2.43226648492335 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 2.41007732307954 | bayes_pls_golite062009 |
| ligand-gated channel activity | 2.41007732307954 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 2.36191716490754 | bayes_pls_golite062009 |
| inward rectifier potassium channel activity | 1.02042603980667 | bayes_pls_golite062009 |
|
Region A: Residues: [630-871] |
1 11 21 31 41 51
| | | | | |
1 LTTERMINPI ENAEDLASQT EISYGTLDSG STMTFFRDSV IETYKKIWRS MDNKKPSAFT 60
61 TTYEDGIKRV NQGNYAFLME STMLDYIVQR DCNLTQIGGL LDTKGYGIAT PKGSPWRDKI 120
121 SLAILELQER GDIQMLYDKW WKNTDETCTR KNTSKQSKAN SLGLESIGGV FVVLIAGIIV 180
181 AAVVAFFEFC ERNYTPPDRS FWIEIAEELR YASWCMNKQK RPALTRTCSK CTIPKGQRIN 240
241 KL
|
| Detection Method: | |
| Confidence: | 30.522879 |
| Match: | 1yaeA |
| Description: | Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid |
Matching Structure (courtesy of the PDB): |
|
