YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CG9935-PC

General Information:
Name(s) found: CG9935-PC / FBpp0110207 [FlyBase]
Description(s) found:
Found 9 descriptions.
SHOW ALL
  • This gene is referred to in FlyBase by the symbol Dmel\CG9935 (CG9935, FBgn0039916). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 4:656751..667182. It has the cytological map location 102D1. Based on sequence similarity, it is predicted to have molecular function</span>: kainate selective glutamate receptor activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: ion transport. 4 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 871 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA]
    Biological Process: ion transport [IEA]
    Molecular Function: kainate selective glutamate receptor activity [ISS]
    extracellular-glutamate-gated ion channel activity [IEA]
    ionotropic glutamate receptor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIASGFLLF QFLSYGLGVP PLVRIGAIFS NQPGMYNSEL AFRYAIHRLN MDKSLLPETT  60
   61 VDYYVEYVNR FDSFETVQKV CKLIRVGVQA VFSPTDSVLA THINSICDAL DIPNIGRSAH 120
  121 DFSINVYPSK QLVNYAFNDV IQYLNWTRFG ILHEKENGII NLHQLSRSFH GEVHMRQVSR 180
  181 DSYVSALNEF KGKEIHNIII DTNSNGISIL LKNILQQQMN EYKYHYLFTS FDLETYDLED 240
  241 FKYNFVNITS FRLVDTADVG VKQILKDIGL YSHHIFKKPY LNLHIKKSTI LESEPALMFD 300
  301 SVYVFAIGLQ TLEQSHSLTL LNISCEEENS WDGGLSLINY LNAVEWKGLT GPIQFKDGQR 360
  361 VQFKLDLIKL KQHSIVKVGE WTPHGHLNIT EPSMFFDAGS MNVTLVVITI LETPYVMMHY 420
  421 GKNFTGNERF YGFCVDILET ISREVGFDYI LDLVPDRKYG AKDPETGEWN GMVAQLMKYK 480
  481 ADLAVGSMTI TYARESVIDF TKPFMNLGIS ILFKVPTSEP TRLFSFMNPL AIEIWIYVLI 540
  541 AYFLVSLCIY IVGKLSPIEW KCINACDLEN ISIGNQFSLT DSFWFTIGTF MQQSPDIYPR 600
  601 AMSTRIISST WGFFSLIIVA SYTANLAAFL TTERMINPIE NAEDLASQTE ISYGTLDSGS 660
  661 TMTFFRDSVI ETYKKIWRSM DNKKPSAFTT TYEDGIKRVN QGNYAFLMES TMLDYIVQRD 720
  721 CNLTQIGGLL DTKGYGIATP KGSPWRDKIS LAILELQERG DIQMLYDKWW KNTDETCTRK 780
  781 NTSKQSKANS LGLESIGGVF VVLIAGIIVA AVVAFFEFCE RNYTPPDRSF WIEIAEELRY 840
  841 ASWCMNKQKR PALTRTCSKC TIPKGQRINK L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..498] PSI-BLAST 44.0 No description for 2e4uA was found.
    2 View Details [499..629] FFAS03 1.3 Intermediate gating structure 1 of the inwardly rectifying K+ channel KirBac3.1
    3 View Details [630..871] PSI-BLAST 30.522879 Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • gated channel activity
    		•  3.69159251802076 bayes_pls_golite062009
  • voltage-gated potassium channel activity
    		•  3.44021953730907 bayes_pls_golite062009
  • potassium channel activity
    		•  3.390404838627 bayes_pls_golite062009
  • voltage-gated cation channel activity
    		•  3.03335269249917 bayes_pls_golite062009
  • voltage-gated ion channel activity
    		•  2.97559865523675 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  2.97010589436002 bayes_pls_golite062009
  • channel activity
    		•  2.96709641892817 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  2.96709641892817 bayes_pls_golite062009
  • voltage-gated channel activity
    		•  2.95293713789301 bayes_pls_golite062009
  • cation channel activity
    		•  2.93137972840708 bayes_pls_golite062009
  • ion channel activity
    		•  2.90649323275732 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  2.79927269240187 bayes_pls_golite062009
  • transporter activity
    		•  2.77619896060397 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.65613366364107 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.60593795082679 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  2.51155410430955 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  2.43226648492335 bayes_pls_golite062009
  • ligand-gated ion channel activity
    		•  2.41007732307954 bayes_pls_golite062009
  • ligand-gated channel activity
    		•  2.41007732307954 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  2.36191716490754 bayes_pls_golite062009
  • inward rectifier potassium channel activity
    		•  1.02042603980667 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle