YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SNF8

General Information:
Name(s) found: SNF8 [HGNC (HUGO)]
Description(s) found:
SHOW ONLY BEST
  • gi|73919323|sp|Q96H20.1|SNF8_HUMAN RecName: Full=Vacuolar-sorting protein SNF8; AltName: Full=ESCRT-II complex subunit VPS22; AltName: Full=ELL-associated protein of 30 kDa [NCBI NR]
  • gi|21361380|ref|NP_009172.2| EAP30 subunit of ELL complex [Homo sapiens] [NCBI NR]
  • gi|211939079|pdb|2ZME|A Chain A, Integrated Structural And Functional Model Of The Human Escrt-Ii Complex [NCBI NR]
  • gi|14290426|gb|AAH08976.1| SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) [Homo sapiens] [NCBI NR]
  • gi|119615105|gb|EAW94699.1| SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae), isoform CRA_b [Homo sapiens] [NCBI NR]
  • SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) [HGNC (HUGO)]
  • Vacuolar-sorting protein SNF8 OS=Homo sapiens GN=SNF8 PE=1 SV=1 [Swiss-Prot]
  • Hypothetical protein [hmr_yeast5_DM3-1_pombe.fasta]
  • EAP30 subunit of ELL complex [HMR_022704.fasta]
  • EAP30 subunit of ELL complex [Homo sapiens]gi|14290426|gb|AAH08976.1| EAP30 subunit of ELL complex [Homo sapiens] [nrdb_11152004_Chlamydomonas]
  • Vacuolar sorting protein SNF8 (ELL-associated protein of 30 kDa) [Yateslab_human_na_07-28-2006_reversed.fasta]
  • Tax_Id=9606 Splice Isoform 1 of Vacuolar sorting protein SNF8 [EBI-IPI_human_3.17_05-09-2006_con_reversed.fasta]
  • (NM_007241) EAP30 subunit of ELL complex [Homo sapiens] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • EAP30 subunit of ELL complex [Homo sapiens] [NCBI-RefSeq_Human_na_12_06_2006_con_reversed.fasta]
  • Tax_Id=9606 EAP30 subunit of ELL complex [EBI-IPI_human_3.04_03-07-2005_reverse.fasta]
  • Vacuolar-sorting protein SNF8 (ELL-associated protein of 30 kDa) [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae), isoform CRA_b [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Tax_Id=9606 Isoform 1 of Vacuolar sorting protein SNF8 [EBI-IPI_human_3.23_11-02-2006_con_reversed.fasta]
  • Tax_Id=9606 EAP30 SUBUNIT OF ELL COMPLEX [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • RecName: Full=Vacuolar-sorting protein SNF8; AltName: Full=ELL-associated protein of 30 kDa [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • Tax_Id=9606 Gene_Symbol=SNF8 Isoform 1 of Vacuolar-sorting protein SNF8 [human-ipi-250309-contam.fasta]
  • IPI:IPI00101524.3|SWISS-PROT:Q96H20-1|ENSEMBL:ENSP00000290330|REFSEQ:NP_009172|H-INV:HIT000034120|VEGA:OTTHUMP00000181983 Tax_Id=9606 Gene_Symbol=SNF8 Isoform 1 of Vacuolar-sorting protein SNF8 [ipi.HUMAN.fasta.20090807]
  • [human_BMb_040710_contam.fasta]
  • Tax_Id=9606 Gene_Symbol=SNF8 Isoform 1 of Vacuolar-sorting protein SNF8 ENSG00000159210 IPI00101524 IPI00795683 IPI00793719 IPI00794840 IPI00794422 IPI00640699 IPI00795691 [drosphohumanreversed.fasta]
  • Tax_Id=9606 Gene_Symbol=SNF8 Isoform 1 of Vacuolar sorting protein SNF8 [EBI-IPI_human_3.30_06-28-2007_con_reversed.fasta]
  • vacuolar-sorting protein SNF8 [Homo sapiens] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • Q96H20;Q8IXY3;Q9UN50; RecName: Full=Vacuolar-sorting protein SNF8; AltName: Full=ESCRT-II complex subunit VPS22; AltName: Full=ELL-associated protein of 30 kDa; [UniProt_Human_2010_06_06-01-2010_reversed.fasta]
  • Isoform 1 of Vacuolar-sorting protein SNF8 OS=Homo sapiens GN=SNF8 [011711_HMR.fasta]
  • Vacuolar-sorting protein SNF8 n=15 Tax=Tetrapoda RepID=SNF8_HUMAN [UniProt_Xenopus_laevis_01-01-2011_reversed.fasta]
  • GeneSymbol=SNF8 Synonyms=Dot3|EAP30|VPS22 vacuolar-sorting protein SNF8 [Homo sapiens] [NCBI-RefSeq_Human_Seno_07-12-2011_reversed.fasta]
  • IPI:IPI00101524.3|SWISS-PROT:Q96H20-1|ENSEMBL:ENSP00000421380|REFSEQ:NP_009172|H-INV:HIT000034120|VEGA:OTTHUMP00000218490 Tax_Id=9606 Gene_Symbol=SNF8 Isoform 1 of Vacuolar-sorting protein SNF8 [ipi.HUMAN.20110912.fasta]
  • Vacuolar-sorting protein SNF8 GN=SNF8 [Doctor+uniprot-HUMAN-120911.fasta]
    • Organism: Homo sapiens
    Length: 258 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRRGVGAGA IAKKKLAEAK YKERGTVLAE DQLAQMSKQL DMFKTNLEEF ASKHKQEIRK  60
   61 NPEFRVQFQD MCATIGVDPL ASGKGFWSEM LGVGDFYYEL GVQIIEVCLA LKHRNGGLIT 120
  121 LEELHQQVLK GRGKFAQDVS QDDLIRAIKK LKALGTGFGI IPVGGTYLIQ SVPAELNMDH 180
  181 TVVLQLAEKN GYVTVSEIKA SLKWETERAR QVLEHLLKEG LAWLDLQAPG EAHYWLPALF 240
  241 TDLYSQEITA EEAREALP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..258] PSI-BLAST 72.0 Structure of the ESCRT-II endosomal trafficking complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  5.55329976718261 bayes_pls_golite062009
  • DNA binding
    		•  5.08959163553491 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.99681957904233 bayes_pls_golite062009
  • transcription factor activity
    		•  4.33152142980289 bayes_pls_golite062009
  • transcription repressor activity
    		•  3.85678231380989 bayes_pls_golite062009
  • binding
    		•  3.52874320222492 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.60738445921725 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.48053910222825 bayes_pls_golite062009
  • transcription activator activity
    		•  2.37668609508629 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.2723726467408 bayes_pls_golite062009
  • specific transcriptional repressor activity
    		•  0.96257232341735 bayes_pls_golite062009
  • transcription factor binding
    		•  0.85714789329232 bayes_pls_golite062009
  • protein binding
    		•  0.753698599635855 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.750801486608713 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.66743181561551 bayes_pls_golite062009
  • signal transducer activity
    		•  0.574575108509588 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.574575108509588 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.322180400748724 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity, enhancer binding
    		•  0.23177057841536 bayes_pls_golite062009
  • hydrolase activity
    		•  0.140191206949582 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.136726704233672 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.118016217031359 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.78

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle