YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: DBP1

General Information:
Name(s) found: DBP1 / YPL119C [SGD]
Description(s) found:
Found 23 descriptions.
SHOW ALL
  • Putative ATP-dependent RNA helicase of the DEAD-box protein family; mutants show reduced stability of the 40S ribosomal subunit scanning through 5' untranslated regions of mRNAs [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 617 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: mRNA processing [IGILink to PubMed article][ISSLink to PubMed article]
    translational initiation [IMPLink to PubMed article]
    Molecular Function: RNA helicase activity [ISSLink to PubMed articleLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLPQKVSN LSINNKENGG GGGKSSYVPP HLRSRGKPSF ERSTPKQEDK VTGGDFFRRA  60
   61 GRQTGNNGGF FGFSKERNGG TSANYNRGGS SNYKSSGNRW VNGKHIPGPK NAKLEAELFG 120
  121 VHDDPDYHSS GIKFDNYDNI PVDASGKDVP EPILDFSSPP LDELLMENIK LASFTKPTPV 180
  181 QKYSIPIVTK GRDLMACAQT GSGKTGGFLF PLFTELFRSG PSPVPEKAQS FYSRKGYPSA 240
  241 LVLAPTRELA TQIFEEARKF TYRSWVRPCV VYGGAPIGNQ MREVDRGCDL LVATPGRLND 300
  301 LLERGKVSLA NIKYLVLDEA DRMLDMGFEP QIRHIVEECD MPSVENRQTL MFSATFPVDI 360
  361 QHLARDFLDN YIFLSVGRVG STSENITQRI LYVDDMDKKS ALLDLLSAEH KGLTLIFVET 420
  421 KRMADQLTDF LIMQNFKATA IHGDRTQAER ERALSAFKAN VADILVATAV AARGLDIPNV 480
  481 THVINYDLPS DIDDYVHRIG RTGRAGNTGV ATSFFNSNNQ NIVKGLMEIL NEANQEVPTF 540
  541 LSDLSRQNSR GGRTRGGGGF FNSRNNGSRD YRKHGGNGSF GSTRPRNTGT SNWGSIGGGF 600
  601 RNDNEKNGYG NSNASWW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run BOI2 Boi 2 gst control McCusker D, et al (2007)
    View Run VAM3 Sample: HX11 - both fusion and trans-SNARE complex formation take place. Hao Xu, et al. (2010)
    View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #11 Mitotic Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen TEP1 DBP1 2 Unpublished Fields Lab Data

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data DBP1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..146] MSA 7.633997 View MSA. No confident structure predictions are available.
    2 View Details [147..381] PSI-BLAST 651.228787 Putative DEAD box RNA helicase
    3 View Details [382..557] PSI-BLAST 651.228787 Putative DEAD box RNA helicase
    4 View Details [558..617] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle