YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: YMR259C

General Information:
Name(s) found: YMR259C [SGD]
Description(s) found:
SHOW ONLY BEST
  • gi|6323915|ref|NP_013986.1| Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YMR259C is not an essential gene; Ymr259cp [Saccharomyces cerevisiae] [NCBI NR]
  • gi|2497212|sp|Q03496.1|YM8B_YEAST RecName: Full=Uncharacterized protein YMR259C [NCBI NR]
  • pir||S54471 probable membrane protein YMR259c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • Uncharacterized protein YMR259C OS=Saccharomyces cerevisiae GN=YMR259C PE=1 SV=1 [Swiss-Prot]
  • Protein of unknown function localised to cytoplasm [mips]
  • Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YMR259C is not an essential gene [SGD]
  • YMR259C, Chr XIII from 784620-788882, reverse complement [yeast_orfs2]
  • Chr XIII from 784620-788882, reverse complement [yeastorf3.fasta]
  • Chr XIII from 788882-784620, reverse complement [yeastorf5.fasta]
  • (Q03496) Hypothetical 163.6 kDa protein in PET111-TIF11 intergenic region [4932.FASTACCERV.txt]
  • YMR259C SGDID:S0004872, Chr XIII from 788882-784620, reverse complement, Uncharacterized ORF [yeastflysequest.fasta]
  • Ymr259cp [Saccharomyces cerevisiae]gi|2497212|sp|Q03496|YM8B_YEAST Hypothetical 163.6 kDa protein in PET111-TIF11 intergenic regiongi|2132727|pir||S54471 probable membrane protein YMR259c - yeast (Saccharomyces cerevisiae) [nrdb_11152004_Chlamydomonas]
  • YMR259C SGDID:S000004872, Chr XIII from 788882-784620, reverse complement, Uncharacterized ORF, "Hypothetical protein" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • YMR259C SGDID:S000004872, Chr XIII from 788882-784620, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YMR259C is not an essential gene" [yeast-contam.fasta]
  • Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YMR259C is not an essential gene; Ymr259cp [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Hypothetical 163.6 kDa protein in PET111-TIF11 intergenic region [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • Uncharacterized protein YMR259C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR259C PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • YMR259C SGDID:S000004872, Chr XIII from 788883-784621, Genome Release 64-1-1, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YMR259C is not an essential gene" [yeast-030211-contam.fasta]
  • tRNA (cytidine(32)-2'-O)-methyltransferase non-catalytic subunit TRM732 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRM732 PE=1 SV=1 [YEAST.fasta.20131015]
  • TRM732 SGDID:S000004872, Chr XIII from 788883-784621, Genome Release 64-2-1, reverse complement, Verified ORF, "Interacts with Trm7p for 2'-O-methylation of C32 of substrate tRNAs; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; non-essential gene" [20141208_orf_trans.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 1420 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTDVQFSSQ EIELFRVKEF LIANNPAKIN NENKDAVLTQ IEHDFRYLIQ YIKDGLPNLN  60
   61 ESTRLIFPDT FSICLLRSHQ IIASKKIDSQ EFLSAVKEQL LTEANANIIF EYVLDFWADG 120
  121 GAPLMNALRD LFSKLLNLLK ITYPMSTLKD VLFNWMNEIL EVPSTLRVQY YLIDALSSDF 180
  181 DLYYIIEKKP HFIDNSFSLM NSDLLANSVG KCIVSLLLNI YEKHFKKNES FVQEWIQLWK 240
  241 SCALKYIHDK QYTKSINLYI MIPLFKNMPN SAFTLFLECM SNKDPSLLLS LLKIGQELGI 300
  301 EEEPFCDNKY TTVDSVNKLI EQDEYKLQVF EILTFSTKKS KPIRPFVFKT IKQYLYVFFV 360
  361 DTELERRNYF CSSMKHFIFR TRDCAYSLAR DARKLKKAEK FPDEQREKLA QVEEARAFLV 420
  421 WLCNFIKYNL APGTLYQANV TSLKLMHILI KSGVDKSTPQ KFLDNQNKRE YPFSIPILQD 480
  481 VTFLRLLIDL LVSNYADVRE LSKEMLFIMI SADESRGLFL DTLDANALKW TATSLLSDYE 540
  541 KGDAGATVYE FIFTVMGSQR SFIDQTIDIL AQMVQNLQND SIGCAENSIG PHFAALSLIL 600
  601 NKFNSEENHQ DTSKIISKLI NLVLKSWEAT RNVVCHDSAH GILPEKYANC GVPDQVIISH 660
  661 AFRAIKEASY LLETILKKYP LTRDQLDSIG DLFIVQLSTI RHSGAFQAVL PGLKAFCIRC 720
  721 QLEFPAILEE LLSKSVKSLK SKTQHITRRS GGLPFLVTTV LSAEVTKGRP LLQKTFENLL 780
  781 LVARLPIPPH QDEFDLPQVN AINCINAIFV EPKLSVHCTS FVSEALELAL LNFDCDIWAL 840
  841 RNCSIMLFTS LQNRIFGKVG RSVSAKLFFT KYSGLRQLLL NILNSSIAQY SGSERKSYQI 900
  901 ESIFLVLNVL LRLRPTAGYT GLKEFNVSVY ECLSNENWKI RDMASRVLHM LSENFEEEIR 960
  961 KLLDLASIAK QNQLHGHLLA LQQLVPQYLS GTRDMELIQR ILEKKRMLLL ENKCFITKKA1020
 1021 YLKLTCCILE TCDIPDSILK DYISTLRNTF IAENNEYVVD GSKQLYLAQI LDMLLKYEDS1080
 1081 IYLDDICLLG LYSPFYEAQL STLQYMNTNF HWETTRNSEF LEQLQLLLRV PDLLPMAKAL1140
 1141 VVKILSRKKN TLSLTTCTDL LKTNNSEDTK LAAVSSLSAK LSSQTFHQVW NLLQGFFADS1200
 1201 CSKDFRLASL ECLTAYPESC KNSRILLQLY NFLWDDDSEI REKASFYLNK NFIQTADWEY1260
 1261 NRNTSVTALI FTKKFVDVFT SSEVVEELCL QLFQYLNEYD MFAAEESAKN CLFTIEKDNQ1320
 1321 FINELQKAMH ILNMIKLTGR DISKCYKDQI HHLKSALLEH FNTEDFKDSP LGWCSNAEIF1380
 1381 SRITLLKELI QHYSPSDYEN FINVLTKHSV HPLIISYSQL

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) CLB1 CUE5 LSB3 RTT10 TRM7 YMR259C YSC84

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run RPA135 No Comments Schneider, DA, et al. (2006)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data YMR259C Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..162] MSA 1.005942 View MSA. No confident structure predictions are available.
    2 View Details [163..304] deduced N/A No confident structure predictions are available.
    3 View Details [305..889] MSA 2.011874 View MSA. No confident structure predictions are available.
    4 View Details [890..1031] MSA 2.011956 View MSA. No confident structure predictions are available.
    5 View Details [1032..1420] deduced N/A No confident structure predictions are available.
    6 View Details [1256..1420] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • binding
    		•  1.68714838468719 bayes_pls_golite062009
  • protein binding
    		•  1.3800948965226 bayes_pls_golite062009
  • RNA binding
    		•  0.538045152794259 bayes_pls_golite062009
    6 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle