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Protein Overview: YMR160W

General Information:
Name(s) found: YMR160W [SGD]
Description(s) found:
Found 24 descriptions.
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  • Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the membrane of the vacuole; mutant has enhanced sensitivity to overexpression of mutant huntingtin; YMR160W is not an essential gene [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 816 amino acids

    Gene Ontology:
    Cellular Component: fungal-type vacuole membrane [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVVQQKQDK QLQHQTQEQQ QIREDQQEVP PQRPRQQNRW KPWWNSTADD EPNTGRIAEY  60
   61 PNGQGRSSPT TDFQDSVNSN NDNKGIWSKI ASFATSRYRS APIVVDDNTR YSQLNTEQIN 120
  121 FLENEAKDII SKKSKSWCWY EAIPHISNSS NIIDSIDTPG IISVSGTGSA KCPLPLNKYP 180
  181 GEGGNPGYNV FINDSLILPS DNPLNFLHVQ PLRTKVLNTI KNYYNFPNEQ HLYLRQKKTA 240
  241 LLKDKRIIII SVVGDLPEKY EQRSLESQRS AYYLSRKLSQ NLAQEQPQRV LTLSFQCPLH 300
  301 NQDLIPTYKE CVELLNHWAH LFKEVDSIFF VGVYHSVPLT LLLAKYIVQN NEVLEFDENT 360
  361 TVSVLSFQSC LQGYRFWDHS TDFTSNSYNN LGSNSSTNEN DSNDHDSNND FTTKSQQIKE 420
  421 KQLFQGIDKK QQDTLSKIKN YRRIDSSESK LVQDALDWLL FNWDTFRLTF FGKLYDNFMT 480
  481 ISEKLAIDYN HPKILRNLWC NGKYMGIDLK NANNLNLDTD DEATSNINDV HVRTPNFESR 540
  541 LKIPTNRLFE ITLWDILMIT ENLGYKQFIP IINLLSPFFI SRSFNDYTLP PNIRKQYQNS 600
  601 NKIWLQEMDS KWKMNGHQLN YDQREGESLG SSSESLLPEN ISTVKDFLQF VQYQNEKSSD 660
  661 FVRIYSDIYD DDKVYKCFLY NTIFTKNPLS RKHLRLNIDL DTPTSILNTV NQYDLVWKIH 720
  721 DSFSKLIQLK NLPQREIPHA LRLSISLNCF LDSTTSTSGP VFQRDTVEAL RRLTEIWRTY 780
  781 QDWSPPTRGL KHLRDILSVL AMYDNPKNLI NDVRRT

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) GDH2 YMR160W

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #03 Alpha Factor Prep1-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data YMR160W Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..816] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle