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Protein Overview: YML079W

General Information:
Name(s) found: YML079W [SGD]
Description(s) found:
Found 23 descriptions.
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  • Non-essential protein of unknown function with structural resemblance to plant storage and ligand binding proteins (canavalin, glycinin, auxin binding protein) and to some enzymes (epimerase, germin); localizes to the nucleus and cytoplasm [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 201 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANVQEAAN AAIEPASFVK VPMPEPPSSL QQLINDWQLI KHREGGYFKE TDRSPYTMEV  60
   61 EKPVNGGSGN TEMVTRNQST LIYYLLTPDS PIGKFHKNIN RIIHILQRGK GQYVLVYPDG 120
  121 QVKSFKVGFD YKNGEVSQWV VPGGVFKASF LLPNEEFDNG FLISEVVVPG FDFEDHTFLK 180
  181 GEDELKHLVG PEKAAELAFL A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen TAM41 YML079W 1 Hazbun TR, et al. (2003)
    View Screen COG4 YML079W 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data YML079W Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..132] MSA 1.01398 View MSA. No confident structure predictions are available.
    2 View Details [133..201] MSA 1.01399 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein binding
    		•  1.03522088946669 bayes_pls_golite062009
  • binding
    		•  0.953125058973909 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.438373848577752 bayes_pls_golite062009
  • catalytic activity
    		•  0.401988496917198 bayes_pls_golite062009
  • DNA binding
    		•  0.122514771063438 bayes_pls_golite062009
  • hydrolase activity
    		•  0.121981409274176 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.100327255489946 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle