YRC Public Data Repository - Protein Structure Prediction

Protein:	YML079W
Organism:	Saccharomyces cerevisiae
Length:	201 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YML079W.

Description	E-value	Query Range	Subject Range
gi\|190408165 - gi\|190408165\|gb\|EDV11430.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|207342560 - gi\|207342560\|gb\|EDZ70292.1\| YML079Wp-like protein [Saccharomyces cerevisiae AWRI1631] YML079W - Non-essential protein of unknown function with structural resemblance to plant storage and ligand bi... YMH9_YEAST - Uncharacterized protein YML079W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML079W ... gi\|151946085 - gi\|151946085\|gb\|EDN64316.1\| conserved protein [Saccharomyces cerevisiae YJM789]	2.0E-80	[1..201]	[1..201]
gi\|85100907 - gi\|85100907\|ref\|XP_961056.1\| hypothetical protein NCU01149 [Neurospora crassa OR74A] gi\|18376266, gi\|... - gi\|32412324\|ref\|XP_326642.1\| hypothetical protein [Neurospora crassa], gi\|28922593\|gb\|EAA31820.1\| pr...	4.0E-51	[15..196]	[26..253]
gi\|7470017 - pir\|\|S74709 hypothetical protein sll1188 - Synechocystis sp. (strain PCC 6803) gi\|16329452, gi\|... - gi\|1651934\|dbj\|BAA16860.1\| sll1188 [Synechocystis sp. PCC 6803], gi\|16329452\|ref\|NP_440180.1\| hypoth...	7.0E-49	[34..193]	[9..156]
gi\|8778289, gi\|2... - gi\|8778289\|gb\|AAF79298.1\|AC068602_21 F14D16.29 [Arabidopsis thaliana], pir\|\|F86324 protein F14D16.29...	5.0E-48	[32..192]	[10..187]
gi\|18310898, gi\|... - gi\|18310898\|ref\|NP_562832.1\| hypothetical protein CPE1916 [Clostridium perfringens str. 13], gi\|1814...	6.0E-48	[28..196]	[3..160]
gi\|25365140 - pir\|\|A99508 conserved hypothetical protein spr1892 [imported] - Streptococcus pneumoniae (strain R6) gi\|15903933, gi\|... - gi\|15903933\|ref\|NP_359483.1\| hypothetical protein spr1892 [Streptococcus pneumoniae R6], gi\|15459585...	1.0E-45	[24..196]	[8..164]
gi\|21222454, gi\|... - gi\|21222454\|ref\|NP_628233.1\| hypothetical protein SCO4051 [Streptomyces coelicolor A3(2)], gi\|131221...	1.0E-42	[24..200]	[3..162]
gi\|17431200 - gi\|17431200\|emb\|CAD17880.1\| hypothetical protein of unknown function duf985 [Ralstonia solanacearum ... gi\|17548950 - gi\|17548950\|ref\|NP_522290.1\| hypothetical protein RS01699 [Ralstonia solanacearum GMI1000]	3.0E-42	[23..186]	[1..153]
gi\|15901897, gi\|... - gi\|15901897\|ref\|NP_346501.1\| hypothetical protein SP_2081 [Streptococcus pneumoniae TIGR4], gi\|14973... gi\|25365138 - pir\|\|D95243 conserved hypothetical protein SP2081 [imported] - Streptococcus pneumoniae (strain TIGR...	5.0E-42	[33..196]	[1..148]
gi\|15075689 - gi\|15075689\|emb\|CAC47244.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi\|15966418 - gi\|15966418\|ref\|NP_386771.1\| hypothetical protein SMc00707 [Sinorhizobium meliloti 1021]	8.0E-40	[28..179]	[6..137]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANVQEAAN AAIEPASFVK VPMPEPPSSL QQLINDWQLI KHREGGYFKE TDRSPYTMEV  60
   61 EKPVNGGSGN TEMVTRNQST LIYYLLTPDS PIGKFHKNIN RIIHILQRGK GQYVLVYPDG 120
  121 QVKSFKVGFD YK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
protein binding	1.03522088946669	bayes_pls_golite062009
binding	0.953125058973909	bayes_pls_golite062009
nucleic acid binding	0.438373848577752	bayes_pls_golite062009
catalytic activity	0.401988496917198	bayes_pls_golite062009
DNA binding	0.122514771063438	bayes_pls_golite062009
hydrolase activity	0.121981409274176	bayes_pls_golite062009
transcription regulator activity	0.100327255489946	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [133-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGEVSQWVVP GGVFKASFLL PNEEFDNGFL ISEVVVPGFD FEDHTFLKGE DELKHLVGPE  60
   61 KAAELAFLA