YRC Public Data Repository - Protein Structure Prediction

Protein:	YML079W
Organism:	Saccharomyces cerevisiae
Length:	201 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YML079W.

Description	E-value	Query Range	Subject Range
gi\|190408165 - gi\|190408165\|gb\|EDV11430.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|207342560 - gi\|207342560\|gb\|EDZ70292.1\| YML079Wp-like protein [Saccharomyces cerevisiae AWRI1631] YML079W - Non-essential protein of unknown function with structural resemblance to plant storage and ligand bi... YMH9_YEAST - Uncharacterized protein YML079W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML079W ... gi\|151946085 - gi\|151946085\|gb\|EDN64316.1\| conserved protein [Saccharomyces cerevisiae YJM789]	2.0E-80	[1..201]	[1..201]
gi\|85100907 - gi\|85100907\|ref\|XP_961056.1\| hypothetical protein NCU01149 [Neurospora crassa OR74A] gi\|18376266, gi\|... - gi\|32412324\|ref\|XP_326642.1\| hypothetical protein [Neurospora crassa], gi\|28922593\|gb\|EAA31820.1\| pr...	4.0E-51	[15..196]	[26..253]
gi\|7470017 - pir\|\|S74709 hypothetical protein sll1188 - Synechocystis sp. (strain PCC 6803) gi\|16329452, gi\|... - gi\|1651934\|dbj\|BAA16860.1\| sll1188 [Synechocystis sp. PCC 6803], gi\|16329452\|ref\|NP_440180.1\| hypoth...	7.0E-49	[34..193]	[9..156]
gi\|8778289, gi\|2... - gi\|8778289\|gb\|AAF79298.1\|AC068602_21 F14D16.29 [Arabidopsis thaliana], pir\|\|F86324 protein F14D16.29...	5.0E-48	[32..192]	[10..187]
gi\|18310898, gi\|... - gi\|18310898\|ref\|NP_562832.1\| hypothetical protein CPE1916 [Clostridium perfringens str. 13], gi\|1814...	6.0E-48	[28..196]	[3..160]
gi\|25365140 - pir\|\|A99508 conserved hypothetical protein spr1892 [imported] - Streptococcus pneumoniae (strain R6) gi\|15903933, gi\|... - gi\|15903933\|ref\|NP_359483.1\| hypothetical protein spr1892 [Streptococcus pneumoniae R6], gi\|15459585...	1.0E-45	[24..196]	[8..164]
gi\|21222454, gi\|... - gi\|21222454\|ref\|NP_628233.1\| hypothetical protein SCO4051 [Streptomyces coelicolor A3(2)], gi\|131221...	1.0E-42	[24..200]	[3..162]
gi\|17431200 - gi\|17431200\|emb\|CAD17880.1\| hypothetical protein of unknown function duf985 [Ralstonia solanacearum ... gi\|17548950 - gi\|17548950\|ref\|NP_522290.1\| hypothetical protein RS01699 [Ralstonia solanacearum GMI1000]	3.0E-42	[23..186]	[1..153]
gi\|15901897, gi\|... - gi\|15901897\|ref\|NP_346501.1\| hypothetical protein SP_2081 [Streptococcus pneumoniae TIGR4], gi\|14973... gi\|25365138 - pir\|\|D95243 conserved hypothetical protein SP2081 [imported] - Streptococcus pneumoniae (strain TIGR...	5.0E-42	[33..196]	[1..148]
gi\|15075689 - gi\|15075689\|emb\|CAC47244.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi\|15966418 - gi\|15966418\|ref\|NP_386771.1\| hypothetical protein SMc00707 [Sinorhizobium meliloti 1021]	8.0E-40	[28..179]	[6..137]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANVQEAAN AAIEPASFVK VPMPEPPSSL QQLINDWQLI KHREGGYFKE TDRSPYTMEV  60
   61 EKPVNGGSGN TEMVTRNQST LIYYLLTPDS PIGKFHKNIN RIIHILQRGK GQYVLVYPDG 120
  121 QVKSFKVGFD YK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
protein binding	1.03522088946669	bayes_pls_golite062009
binding	0.953125058973909	bayes_pls_golite062009
nucleic acid binding	0.438373848577752	bayes_pls_golite062009
catalytic activity	0.401988496917198	bayes_pls_golite062009
DNA binding	0.122514771063438	bayes_pls_golite062009
hydrolase activity	0.121981409274176	bayes_pls_golite062009
transcription regulator activity	0.100327255489946	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [133-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGEVSQWVVP GGVFKASFLL PNEEFDNGFL ISEVVVPGFD FEDHTFLKGE DELKHLVGPE  60
   61 KAAELAFLA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.342	0.572	nucleus	b.40.4	Nucleic acid-binding proteins
View	Download	0.254	0.192	nucleus	d.93.1	SH2 domain
View	Download	0.279	0.084	nucleus	a.144.1	PABC (PABP) domain
View	Download	0.285	0.000	nucleus	b.40.2	Bacterial enterotoxins
View	Download	0.310	N/A	N/A	b.40.4	Nucleic acid-binding proteins
View	Download	0.251	N/A	N/A	d.58.12	eEF-1beta-like
View	Download	0.250	N/A	N/A	d.54.1	Enolase N-terminal domain-like
View	Download	0.239	N/A	N/A	d.129.1	TATA-box binding protein-like
View	Download	0.232	N/A	N/A	d.58.7	RNA-binding domain, RBD
View	Download	0.229	N/A	N/A	b.36.1	PDZ domain-like
View	Download	0.228	N/A	N/A	a.144.1	PABC (PABP) domain
View	Download	0.216	N/A	N/A	d.16.1	FAD-linked reductases, C-terminal domain
View	Download	0.208	N/A	N/A	b.40.2	Bacterial enterotoxins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: