Protein Overview: YMD8

General Information:
Name(s) found:	YMD8 / YML038C [SGD]
Description(s) found: SHOW ONLY BEST	gi\|6323603\|ref\|NP_013674.1\| Putative nucleotide sugar transporter, has similarity to Vrg4p; Ymd8p [Saccharomyces cerevisiae] [NCBI NR] gi\|575681\|emb\|CAA86617.1\| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR] gi\|51013025\|gb\|AAT92806.1\| YML038C [Saccharomyces cerevisiae] [NCBI NR] gi\|2497095\|sp\|Q03697.1\|YMD8_YEAST RecName: Full=Uncharacterized transporter YML038C [NCBI NR] pir\|\|S49741 probable membrane protein YML038c - yeast (Saccharomyces cerevisiae) [NCBI NR] Putative nucleotide-sugar transporter YMD8 OS=Saccharomyces cerevisiae GN=YMD8 PE=1 SV=1 [Swiss-Prot] YMD8 Member of the triose phosphate translocater family of membrane transporters [mips] Putative nucleotide sugar transporter, has similarity to Vrg4p [SGD] YMD8, Chr XIII from 202775-204103, reverse complement [yeast_orfs2] Chr XIII from 202775-204103, reverse complement [yeastorf3.fasta] Chr XIII from 204103-202775, reverse complement [yeastorf5.fasta] YMD8 SGDID:S0004502, Chr XIII from 204103-202775, reverse complement, Verified ORF [yeastflysequest.fasta] Ymd8p [Saccharomyces cerevisiae]gi\|51013025\|gb\|AAT92806.1\| YML038C [Saccharomyces cerevisiae]gi\|575681\|emb\|CAA86617.1\| unnamed protein product [Saccharomyces cerevisiae]gi\|2497095\|sp\|Q03697\|YMD8_YEAST Hypothetical 49.6 kDa protein in CAT2-AMD1 intergen [nrdb_11152004_Chlamydomonas] (Q03697) Hypothetical 49.6 kDa protein in CAT2-AMD1 intergenic region [cerv4932.FASTAC] YMD8 SGDID:S000004502, Chr XIII from 204103-202775, reverse complement, Verified ORF, "Putative nucleotide sugar transporter, has similarity to Vrg4p" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta] Uncharacterized transporter YML038C [nr-271106-contam.fasta] Putative nucleotide sugar transporter, has similarity to Vrg4p; Ymd8p [Saccharomyces cerevisiae] [nr-271106-contam.fasta] YML038C [Saccharomyces cerevisiae] [nr-271106-contam.fasta] [chemostatdb.fasta] Putative nucleotide-sugar transporter YMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMD8 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta] YMD8 SGDID:S000004502, Chr XIII from 204103-202775, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative nucleotide sugar transporter, has similarity to Vrg4p" [yeast-030211-contam.fasta] YMD8 SGDID:S000004502, Chr XIII from 204103-202775, Genome Release 64-2-1, reverse complement, Verified ORF, "Putative nucleotide sugar transporter; has similarity to Vrg4p" [20141208_orf_trans.fasta] TR6529\|c0_g1_i1\|g.4621 ORF TR6529\|c0_g1_i1\|g.4621 TR6529\|c0_g1_i1\|m.4621 type:complete len:443 (+) TR6529\|c0_g1_i1:1393-2721(+) [Y12_S_cerevisiae-Sep2015-contam.fasta] YML038C SGDID:S000004502, Chr XIII from 204103-202775, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative nucleotide sugar transporter, has similarity to Vrg4p" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta] asmbl_4108\|g.2985 ORF asmbl_4108\|g.2985 asmbl_4108\|m.2985 type:complete len:443 (+) asmbl_4108:1392-2720(+) [Y12_Trinity_v2_2_0_PASA_6May2016-contam.fasta] ID=asmbl_4113\|g.2657 ORF ID=asmbl_4113\|g.2657 ID=asmbl_4113\|m.2657 type:complete len:443 (+) ID=asmbl_4113:1392-2720(+) [Y12_quiver_Trinity_v2_2_0_PASA_2June2016-contam.fasta]
Organism:	Saccharomyces cerevisiae
Length:	442 amino acids
Gene Ontology:
Cellular Component:	COPI-coated vesicle [IDA]
Biological Process:	nucleotide-sugar transport [ISS]
Molecular Function:	nucleotide-sugar transmembrane transporter activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRTVFLAFV FGWYFCSIAL SIYNRWMFDP KDGLGIGYPV LVTTFHQATL WLLSGIYIKL  60
   61 RHKPVKNVLR KNNGFNWSFF LKFLLPTAVA SAGDIGLSNV SFQYVPLTIY TIIKSSSIAF 120
  121 VLLFGCIFKL EKFHWKLALS VIIMFVGVAL MVFKPSDSTS TKNDQALVIF GSFLVLASSC 180
  181 LSGLRWVYTQ LMLRNNPIQT NTAAAVEESD GALFTENEDN VDNEPVVNLA NNKMLENFGE 240
  241 SKPHPIHTIH QLAPIMGITL LLTSLLVEKP FPGIFSSSIF RLDTSNGGVG TETTVLSIVR 300
  301 GIVLLILPGF AVFLLTICEF SILEQTPVLT VSIVGIVKEL LTVIFGIIIL SERLSGFYNW 360
  361 LGMLIIMADV CYYNYFRYKQ DLLQKYHSVS TQDNRNELKG FQDFEQLGSK KIAPYSISVD 420
  421 LTNQEYELDM IAQNVSRSSQ QV

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	Qiu et al. (2008)		SEC21 VRG4 YMD8

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	MLP2	#32 Asynchronous Prep-No Phosphopeptide enrichment	Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

	BAIT	PREY	HITS	PUBLICATION
View Screen	TIM50	YMD8	2	Hazbun TR, et al. (2003)
View Screen	EST1	YMD8	2	Uetz P, et al. (2000)
View Screen	SST2	YMD8	2	Unpublished Fields Lab Data
View Screen	SNX3	YMD8	2	Unpublished Fields Lab Data

Microscopy / Localization Data

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	PROTEIN(S)	PUBLICATION
View Data	YMD8	Huh WK, et al. (2003)
View Data	YMD8 and COP1	Huh WK, et al. (2003)

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..157]	Pfam	2.356547	Integral membrane protein DUF6 No confident structure predictions are available.
2	View Details	[158..276]	deduced	N/A	No confident structure predictions are available.
3	View Details	[277..387]	MSA	3.222993	View MSA. No confident structure predictions are available.
4	View Details	[388..442]	deduced	N/A	No confident structure predictions are available.

Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

Philius Transmembrane Prediction:

[View Details]

Source: Reynolds et al. 2008. Manuscript submitted

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2