YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YMD8
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.97
Transmembrane Helix	5	27	0.86
Non-Cytoplasmic	28	34	0.91
Transmembrane Helix	35	58	0.88
Cytoplasmic	59	77	0.88
Transmembrane Helix	78	97	0.92
Non-Cytoplasmic	98	106	0.78
Transmembrane Helix	107	128	0.91
Cytoplasmic	129	134	0.83
Transmembrane Helix	135	153	0.95
Non-Cytoplasmic	154	165	0.86
Transmembrane Helix	166	188	0.93
Cytoplasmic	189	247	0.98
Transmembrane Helix	248	267	0.87
Non-Cytoplasmic	268	295	0.87
Transmembrane Helix	296	318	0.91
Cytoplasmic	319	327	0.82
Transmembrane Helix	328	350	0.92
Non-Cytoplasmic	351	356	0.83
Transmembrane Helix	357	376	0.92
Cytoplasmic	377	442	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRTVFLAFV FGWYFCSIAL SIYNRWMFDP KDGLGIGYPV LVTTFHQATL WLLSGIYIKL  60
   61 RHKPVKNVLR KNNGFNWSFF LKFLLPTAVA SAGDIGLSNV SFQYVPLTIY TIIKSSSIAF 120
  121 VLLFGCIFKL EKFHWKLALS VIIMFVGVAL MVFKPSDSTS TKNDQALVIF GSFLVLASSC 180
  181 LSGLRWVYTQ LMLRNNPIQT NTAAAVEESD GALFTENEDN VDNEPVVNLA NNKMLENFGE 240
  241 SKPHPIHTIH QLAPIMGITL LLTSLLVEKP FPGIFSSSIF RLDTSNGGVG TETTVLSIVR 300
  301 GIVLLILPGF AVFLLTICEF SILEQTPVLT VSIVGIVKEL LTVIFGIIIL SERLSGFYNW 360
  361 LGMLIIMADV CYYNYFRYKQ DLLQKYHSVS TQDNRNELKG FQDFEQLGSK KIAPYSISVD 420
  421 LTNQEYELDM IAQNVSRSSQ QV