| Protein: | YMD8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 442 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMD8.
| Description | E-value | Query Range |
Subject Range |
|
|
9.0E-70 | [1..442] | [1..442] |
|
|
8.0E-48 | [4..416] | [123..495] |
|
|
2.0E-47 | [7..416] | [132..501] |
|
|
4.0E-44 | [8..390] | [104..404] |
|
|
4.0E-42 | [8..390] | [102..402] |
|
|
7.0E-42 | [4..388] | [114..416] |
|
|
3.0E-41 | [9..390] | [105..404] |
|
|
4.0E-41 | [4..386] | [114..414] |
|
Region A: Residues: [1-157] |
1 11 21 31 41 51
| | | | | |
1 MNRTVFLAFV FGWYFCSIAL SIYNRWMFDP KDGLGIGYPV LVTTFHQATL WLLSGIYIKL 60
61 RHKPVKNVLR KNNGFNWSFF LKFLLPTAVA SAGDIGLSNV SFQYVPLTIY TIIKSSSIAF 120
121 VLLFGCIFKL EKFHWKLALS VIIMFVGVAL MVFKPSD
|
| Detection Method: |  |
| Confidence: | 2.356547 |
| Match: | PF00892 |
| Description: | Integral membrane protein DUF6 |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [158-276] |
1 11 21 31 41 51
| | | | | |
1 STSTKNDQAL VIFGSFLVLA SSCLSGLRWV YTQLMLRNNP IQTNTAAAVE ESDGALFTEN 60
61 EDNVDNEPVV NLANNKMLEN FGESKPHPIH TIHQLAPIMG ITLLLTSLLV EKPFPGIFS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [277-387] |
1 11 21 31 41 51
| | | | | |
1 SSIFRLDTSN GGVGTETTVL SIVRGIVLLI LPGFAVFLLT ICEFSILEQT PVLTVSIVGI 60
61 VKELLTVIFG IIILSERLSG FYNWLGMLII MADVCYYNYF RYKQDLLQKY H
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [388-442] |
1 11 21 31 41 51
| | | | | |
1 SVSTQDNRNE LKGFQDFEQL GSKKIAPYSI SVDLTNQEYE LDMIAQNVSR SSQQV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
