| Protein: | YMD8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 442 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMD8.
| Description | E-value | Query Range |
Subject Range |
|
|
9.0E-70 | [1..442] | [1..442] |
|
|
8.0E-48 | [4..416] | [123..495] |
|
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2.0E-47 | [7..416] | [132..501] |
|
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4.0E-44 | [8..390] | [104..404] |
|
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4.0E-42 | [8..390] | [102..402] |
|
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7.0E-42 | [4..388] | [114..416] |
|
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3.0E-41 | [9..390] | [105..404] |
|
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4.0E-41 | [4..386] | [114..414] |
|
Region A: Residues: [1-157] |
1 11 21 31 41 51
| | | | | |
1 MNRTVFLAFV FGWYFCSIAL SIYNRWMFDP KDGLGIGYPV LVTTFHQATL WLLSGIYIKL 60
61 RHKPVKNVLR KNNGFNWSFF LKFLLPTAVA SAGDIGLSNV SFQYVPLTIY TIIKSSSIAF 120
121 VLLFGCIFKL EKFHWKLALS VIIMFVGVAL MVFKPSD
|
| Detection Method: |  |
| Confidence: | 2.356547 |
| Match: | PF00892 |
| Description: | Integral membrane protein DUF6 |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [158-276] |
1 11 21 31 41 51
| | | | | |
1 STSTKNDQAL VIFGSFLVLA SSCLSGLRWV YTQLMLRNNP IQTNTAAAVE ESDGALFTEN 60
61 EDNVDNEPVV NLANNKMLEN FGESKPHPIH TIHQLAPIMG ITLLLTSLLV EKPFPGIFS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.391 | a.7.1 | Spectrin repeat |
| View | Download | 0.318 | a.47.2 | t-snare proteins |
| View | Download | 0.230 | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.218 | a.1.1 | Globin-like |
|
Region A: Residues: [277-387] |
1 11 21 31 41 51
| | | | | |
1 SSIFRLDTSN GGVGTETTVL SIVRGIVLLI LPGFAVFLLT ICEFSILEQT PVLTVSIVGI 60
61 VKELLTVIFG IIILSERLSG FYNWLGMLII MADVCYYNYF RYKQDLLQKY H
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.391 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.318 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.230 | N/A | N/A | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.218 | N/A | N/A | a.1.1 | Globin-like |
|
Region A: Residues: [388-442] |
1 11 21 31 41 51
| | | | | |
1 SVSTQDNRNE LKGFQDFEQL GSKKIAPYSI SVDLTNQEYE LDMIAQNVSR SSQQV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.765 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.643 | a.5.2 | UBA-like |
| View | Download | 0.619 | a.4.1 | Homeodomain-like |
| View | Download | 0.580 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.553 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.493 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.461 | a.153.1 | Nuclear receptor coactivator interlocking domain |
| View | Download | 0.453 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.438 | d.58.17 | Metal-binding domain |
| View | Download | 0.437 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.409 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.397 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.352 | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.349 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.322 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.321 | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.314 | a.28.1 | ACP-like |
| View | Download | 0.301 | a.4.1 | Homeodomain-like |
| View | Download | 0.275 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.272 | a.5.2 | UBA-like |
| View | Download | 0.269 | a.112.1 | Description not found. |
| View | Download | 0.258 | d.58.49 | YajQ-like |
| View | Download | 0.257 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.255 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.244 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.233 | b.34.1 | C-terminal domain of transcriptional repressors |
| View | Download | 0.224 | g.3.7 | Scorpion toxin-like |
