YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: YLR253W

General Information:
Name(s) found: YLR253W [SGD]
Description(s) found:
Found 29 descriptions.
SHOW ALL
  • Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; transcription is periodic during the metabolic cycle; YLR253W is not an essential gene [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 569 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed articleLink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTKAFFNKL PFEVFRRYVR TGKSIPQRSP RTRKSLLVGG TIASAVVLYN FNDTFHDSVK  60
   61 HTALTTKRIA VVTQATTRCF YHYKRALNKS YENKKEREVA LNKCHKMCAL ITLHALRSNG 120
  121 GIYIKLGQHI GAMTYLLPKE WTDTMIPLQD HCPESTYEEI DELFKEDLGT SIEDMFLEFN 180
  181 KTPIGVASLA QVHVAKLKNS DGKGSSVAVK CQHPSLKEFI PLDVMLTRTV FELLDVFFPD 240
  241 YPLTWLGDEL QSSIYVELNF TKEAENAEKT RHYFSKFKKQ TALKIPKVIE SHKRILIMEY 300
  301 VGGKRLDDLE YIDSHGISRS EVSSCLSHIF NNMIFTPNVG IHCDPHGGNL AIRSVKPAKD 360
  361 NGYHNFEIVL FDHGLYRYPS TRTRRLYAKF WLSLLFDKDQ TKMKKYAKGF ANITDEQFPL 420
  421 LAAAITGRSI DAALNYDIST SRTQEEMDVM ANGILEGTLL SDLMSILSRI PRVVLLILKT 480
  481 NDLTRHLDEC LQNPLGPERT FLIMTQYCAK TVYDEKVERI NSEYARWSIK WMWENLTNWI 540
  541 VYERRINQLY FYDFVLWWKK FIPKTWLSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data YLR253W Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..153] deduced N/A No confident structure predictions are available.
    2 View Details [154..300] PSI-BLAST 33.522879 pak1
    3 View Details [301..494] PSI-BLAST 33.522879 pak1
    4 View Details [495..569] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • protein kinase activity
    		•  2.78878187773119 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  2.65696220652782 bayes_pls_golite062009
  • protein serine/threonine kinase activity
    		•  2.52043782881479 bayes_pls_golite062009
  • kinase activity
    		•  2.45757516485965 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  2.08265655536291 bayes_pls_golite062009
  • binding
    		•  1.72646207655432 bayes_pls_golite062009
  • catalytic activity
    		•  1.21655087018101 bayes_pls_golite062009
  • transferase activity
    		•  1.09650209608069 bayes_pls_golite062009
  • ATP binding
    		•  0.57612786382221 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.533622009869642 bayes_pls_golite062009
  • protein binding
    		•  0.529222066176906 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.516315256680509 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.366733507123411 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.366674148714169 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.355425813353478 bayes_pls_golite062009
  • nucleotide binding
    		•  0.350202706382045 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.64

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle