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Protein Overview: YPF1

General Information:
Name(s) found: YPF1 / YKL100C [SGD]
Description(s) found:
Found 27 descriptions.
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  • Putative protein of unknown function with similarity to a human minor histocompatibility antigen and signal peptide peptidases; YKL100C is not an essential gene [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 587 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKYLNSFVD HLSEWSSRAF RNNSSSANQS ASNKELEQVF EQINAIVENH NNKLTTAFDK  60
   61 ISYRVAHKIT HLVESHSLVF NYATLVLIAS ALVVIGSFTS ISSIPFTALP PTREHSLFDP 120
  121 TDFDVDHDCH VIYRENDEDK KKKKKSKRFF DMMDEKHAII LPLTSGCTLL ALYFVIKKLH 180
  181 LNWLKYVVKI LNFNITLLNI PAGTFVYSYF LNSLFRNLSH LASWNPLVVL PRYRVTIADD 240
  241 NEDLNKIGGF VTNLNYKDGL TNSVVHKKTL DEIEKDHWMK HFYRRELVEP KDIKSKRQIS 300
  301 NMYLNSALIV SFVLSIVSTV YFYLSPNDWL ISNAVSMNMA IWSIAQLKLK NLKSGALILI 360
  361 ALFFYDICFV FGTDVMVTVA TNLDIPVKLS LPVKFNTAQN NFNFSILGLG DIALPGMFIA 420
  421 MCYKYDIWKW HLDHDDTEFH FLNWSYVGKY FITAMVSYVA SLVSAMVSLS IFNTAQPALL 480
  481 YIVPSLLIST ILVACWNKDF KQFWNFQYDT IEVDKSLKKA IEKKENSITY STFILSEYYN 540
  541 DADKYALLGD DVNENFDDDE EFVQEEDLSD SSEEELSEED LLDDESS

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) ALD2 ALD3 YLR143W YPF1

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run VAM3 hx21: both fusion and trans-SNARE complex formation take place. Investigating Vam3p, Nyv1p and their partners in trans-SNARE complex Hao Xu, et al. (2010)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data YPF1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..259] deduced N/A No confident structure predictions are available.
    2 View Details [260..587] MSA 25.031977 View MSA. No confident structure predictions are available.
    3 View Details [289..474] MSA 10.094995 View MSA. No confident structure predictions are available.
    4 View Details [475..587] FFAS03 0.974 A DESIGNED FOUR HELIX BUNDLE PROTEIN.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle