| Protein: | YPF1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 587 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPF1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..564] | [1..564] |
|
|
3.0E-77 | [307..573] | [324..602] |
|
|
2.0E-76 | [288..527] | [229..468] |
|
|
2.0E-75 | [305..523] | [322..540] |
|
|
2.0E-72 | [306..522] | [322..537] |
|
|
2.0E-72 | [294..525] | [148..377] |
|
|
1.0E-71 | [294..507] | [157..356] |
|
Region A: Residues: [1-259] |
1 11 21 31 41 51
| | | | | |
1 MDKYLNSFVD HLSEWSSRAF RNNSSSANQS ASNKELEQVF EQINAIVENH NNKLTTAFDK 60
61 ISYRVAHKIT HLVESHSLVF NYATLVLIAS ALVVIGSFTS ISSIPFTALP PTREHSLFDP 120
121 TDFDVDHDCH VIYRENDEDK KKKKKSKRFF DMMDEKHAII LPLTSGCTLL ALYFVIKKLH 180
181 LNWLKYVVKI LNFNITLLNI PAGTFVYSYF LNSLFRNLSH LASWNPLVVL PRYRVTIADD 240
241 NEDLNKIGGF VTNLNYKDG
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [260-587] |
1 11 21 31 41 51
| | | | | |
1 LTNSVVHKKT LDEIEKDHWM KHFYRRELVE PKDIKSKRQI SNMYLNSALI VSFVLSIVST 60
61 VYFYLSPNDW LISNAVSMNM AIWSIAQLKL KNLKSGALIL IALFFYDICF VFGTDVMVTV 120
121 ATNLDIPVKL SLPVKFNTAQ NNFNFSILGL GDIALPGMFI AMCYKYDIWK WHLDHDDTEF 180
181 HFLNWSYVGK YFITAMVSYV ASLVSAMVSL SIFNTAQPAL LYIVPSLLIS TILVACWNKD 240
241 FKQFWNFQYD TIEVDKSLKK AIEKKENSIT YSTFILSEYY NDADKYALLG DDVNENFDDD 300
301 EEFVQEEDLS DSSEEELSEE DLLDDESS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [289-474] |
1 11 21 31 41 51
| | | | | |
1 EPKDIKSKRQ ISNMYLNSAL IVSFVLSIVS TVYFYLSPND WLISNAVSMN MAIWSIAQLK 60
61 LKNLKSGALI LIALFFYDIC FVFGTDVMVT VATNLDIPVK LSLPVKFNTA QNNFNFSILG 120
121 LGDIALPGMF IAMCYKYDIW KWHLDHDDTE FHFLNWSYVG KYFITAMVSY VASLVSAMVS 180
181 LSIFNT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [475-587] |
1 11 21 31 41 51
| | | | | |
1 AQPALLYIVP SLLISTILVA CWNKDFKQFW NFQYDTIEVD KSLKKAIEKK ENSITYSTFI 60
61 LSEYYNDADK YALLGDDVNE NFDDDEEFVQ EEDLSDSSEE ELSEEDLLDD ESS
|
| Detection Method: | |
| Confidence: | 0.974 |
| Match: | 4hb1A |
| Description: | A DESIGNED FOUR HELIX BUNDLE PROTEIN. |
Matching Structure (courtesy of the PDB): |
|
