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Protein Overview: TMA22

General Information:
Name(s) found: TMA22 / YJR014W [SGD]
Description(s) found:
Found 38 descriptions.
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  • Protein of unknown function; associates with ribosomes and has a putative RNA binding domain; interacts with Tma20p; similar to human GRAP and human DRP1, which interacts with human Tma20p homolog MCT-1 [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 198 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    ribosome [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLREVIYCGI CSYPPEYCEF SGKLKRCKVW LSENHADLYA KLYGTDDNTQ EVEAVTNKLA  60
   61 ESSIGEAREE KLEKDLLKIQ KKQENREQRE LAKKLSSKVI IKREARTKRK FIVAISGLEV 120
  121 FDIDMKKLAK TFASRFATGC SVSKNAEKKE EVVIQGDVMD EVETYIHSLL EEKGLKDVKV 180
  181 ETIDAKKKKK PAAEGAAK

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) TMA20 TMA22
    View Details Krogan NJ, et al. (2006) CIN5 TMA20 TMA22
    View Details Gavin AC, et al. (2006) TMA20 TMA22
    View Details Gavin AC, et al. (2002) ASC1 TFA1 TMA20 TMA22

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen MET18 TMA22 1 Unpublished Fields Lab Data
    View Screen SPT23 TMA22 1 Unpublished Fields Lab Data
    View Screen TPT1 TMA22 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data TMA22 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..62] deduced N/A No confident structure predictions are available.
    2 View Details [63..198] PSI-BLAST 20.221849 YciH

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.36535619829821 bayes_pls_golite062009
  • translation initiation factor activity
    		•  0.221356879029422 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.213614307171087 bayes_pls_golite062009
  • protein binding
    		•  0.189517592830504 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle