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Protein Overview: TMA20

General Information:
Name(s) found: TMA20 / YER007C-A [SGD]
Description(s) found:
Found 31 descriptions.
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  • Protein of unknown function that associates with ribosomes and has a putative RNA binding domain; interacts with Tma22p; null mutant exhibits translation defects; has homology to human oncogene MCT-1 [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 181 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    ribosome [IDALink to PubMed article]
    Biological Process: ribosome biogenesis [IMPLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKFTREDV HSRSKVKSSI QRTLKAKLVK QYPKIEDVID ELIPKKSQIE LIKCEDKIQL  60
   61 YSVDGEVLFF QKFDELIPSL KLVHKFPEAY PTVQVDRGAI KFVLSGANIM CPGLTSAGAD 120
  121 LPPAPGYEKG TIVVINAENK ENALAIGELM MGTEEIKSVN KGHSIELIHH LGDPLWNFSV 180
  181 E

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) TMA20 TMA22
    View Details Krogan NJ, et al. (2006) CIN5 TMA20 TMA22
    View Details Gavin AC, et al. (2006) TMA20 TMA22
    View Details Gavin AC, et al. (2002) ASC1 TFA1 TMA20 TMA22

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data TMA20 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..181] PSI-BLAST 21.69897 Archaeosine tRNA-guanine transglycosylase, C3 domain; Archaeosine tRNA-guanine transglycosylase, N-terminal domain; Archaeosine tRNA-guanine transglycosylase, C2 domain


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle