YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CLC1

General Information:
Name(s) found: CLC1 / YGR167W [SGD]
Description(s) found:
SHOW ONLY BEST
  • gi|6321606|ref|NP_011683.1| Clathrin light chain, subunit of the major coat protein involved in intracellular protein transport and endocytosis; thought to regulate clathrin function, two Clathrin heavy chains (CHC1) form the clathrin triskelion structura [NCBI NR]
  • gi|45270434|gb|AAS56598.1| YGR167W [Saccharomyces cerevisiae] [NCBI NR]
  • gi|3545|emb|CAA36515.1| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR]
  • gi|1323294|emb|CAA97192.1| CLC1 [Saccharomyces cerevisiae] [NCBI NR]
  • gi|116499|sp|P17891.1|CLC1_YEAST RecName: Full=Clathrin light chain; Short=CLC [NCBI NR]
  • pir||A36425 clathrin light chain - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • Clathrin light chain OS=Saccharomyces cerevisiae GN=CLC1 PE=1 SV=1 [Swiss-Prot]
  • CLC1 Clathrin light chain [mips]
  • Clathrin light chain, subunit of the major coat protein involved in intracellular protein transport and endocytosis; thought to regulate clathrin function; two Clathrin heavy chains (CHC1) form the clathrin triskelion structural component [SGD]
  • CLC1, Chr VII from 832451-833152 [yeast_orfs2]
  • Chr VII from 832451-833152 [yeastorf3.fasta]
  • Chr VII from 832458-833159 [yeastorf4.fasta]
  • (P17891) Clathrin light chain (CLC) [4932.FASTACCERV.txt]
  • CLC1 SGDID:S0003399, Chr VII from 832459-833160, Verified ORF [yeastflysequest.fasta]
  • CLC1 SGDID:S0003399, Chr VII from 832461-833162, Verified ORF [10112005cervSGD.fasta]
  • Clathrin light chain [Saccharomyces cerevisiae]gi|3545|emb|CAA36515.1| unnamed protein product [Saccharomyces cerevisiae]gi|1323294|emb|CAA97192.1| CLC1 [Saccharomyces cerevisiae]gi|101258|pir||A36425 clathrin light chain - yeast (Saccharomyces cerevis [nrdb_11152004_Chlamydomonas]
  • CLC1 SGDID:S000003399, Chr VII from 832461-833162, Verified ORF, "Clathrin light chain, subunit of the major coat protein involved in intracellular protein transport and endocytosis; thought to regulate clathrin function, two Clathrin heavy chains (CHC1) [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • CLC1 SGDID:S000003399, Chr VII from 832461-833162, Verified ORF, "Clathrin light chain, subunit of the major coat protein involved in intracellular protein transport and endocytosis; thought to regulate clathrin function; two Clathrin heavy chains (CHC1) [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta]
  • Clathrin light chain, subunit of the major coat protein involved in intracellular protein transport and endocytosis; thought to regulate clathrin function, two Clathrin heavy chains (CHC1) form the clathrin triskelion structural component; Clc1p [Saccharo [nr-271106-contam.fasta]
  • Clathrin light chain (CLC) [nr-271106-contam.fasta]
  • unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • YGR167W [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • CLC1 [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • CLC1 SGDID:S000003399, Chr VII from 832461-833162, Verified ORF, "Clathrin light chain, subunit of the major coat protein involved in intracellular protein transport and endocytosis; thought to regulate clathrin function; two Clathrin heavy chains (CHC1) form the clathrin triskelion structural component" [yeast-bovrabprots.fasta]
  • CLC1 SGDID:S000003399, Chr VII from 832461-833162, Verified ORF, "Clathrin light chain, subunit of the major coat protein involved in intracellular protein transport and endocytosis; thought to regulate clathrin function, two Clathrin heavy chains (CHC1) form the clathrin triskelion structural component" [yeast-contam_custom.fasta]
  • [chemostatdb.fasta]
  • Clathrin light chain OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CLC1 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • CLC1 SGDID:S000003399, Chr VII from 832456-833157, Genome Release 64-1-1, Verified ORF, "Clathrin light chain, subunit of the major coat protein involved in intracellular protein transport and endocytosis; thought to regulate clathrin function; two Clathrin heavy chains (CHC1) form the clathrin triskelion structural component" [yeast-030211-contam.fasta]
  • CLC1 SGDID:S000003399, Chr VII from 832456-833157, Genome Release 64-2-1, Verified ORF, "Clathrin light chain; subunit of the major coat protein involved in intracellular protein transport and endocytosis; regulates endocytic progression; thought to regulate clathrin function; the clathrin triskelion is a trimeric molecule composed of three heavy chains that radiate from a vertex and three light chains which bind noncovalently near the vertex of the triskelion" [20141208_orf_trans.fasta]
  • YGR167W SGDID:S000003399, Chr VII from 832456-833157, Genome Release 64-1-1, Verified ORF, "Clathrin light chain, subunit of the major coat protein involved in intracellular protein transport and endocytosis; thought to regulate clathrin function; two Clathrin heavy chains (CHC1) form the clathrin triskelion structural component" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 233 amino acids

    Gene Ontology:
    Cellular Component: clathrin vesicle coat [TASLink to PubMed article]
    Biological Process: vesicle-mediated transport [TASLink to PubMed article]
    endocytosis [IDALink to PubMed article][IMPLink to PubMed article][IPILink to PubMed article]
    Molecular Function: structural molecule activity [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKFPPLED QNIDFTPNDK KDDDTDFLKR EAEILGDEFK TEQDDILETE ASPAKDDDEI  60
   61 RDFEEQFPDI NSANGAVSSD QNGSATVSSG NDNGEADDDF STFEGANQST ESVKEDRSEV 120
  121 VDQWKQRRAV EIHEKDLKDE ELKKELQDEA IKHIDDFYDS YNKKKEQQLE DAAKEAEAFL 180
  181 KKRDEFFGQD NTTWDRALQL INQDDADIIG GRDRSKLKEI LLRLKGNAKA PGA

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) CHC1 CLC1
    View Details (MIPS) Mewes HW, et al. (2004) CHC1 CLC1
    View Details Krogan NJ, et al. (2006) CHC1 CLC1
    View Details Gavin AC, et al. (2006) CHC1 CLC1
    View Details Gavin AC, et al. (2002) ASC1 CHC1 CLC1 LYS12 TSA1 YHB1
    View Details Qiu et al. (2008) CHC1 CLC1

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run SMC5 No Comments Hazbun TR, et al. (2003)
    View Run CWC2 No Comments Hazbun TR, et al. (2003)
    View Run ALG13 No Comments Hazbun TR, et al. (2003)
    View Run NAF1 No Comments Hazbun TR, et al. (2003)
    View Run NSE3 No Comments Hazbun TR, et al. (2003)
    View Run SEC10 No Comments De Craene, J., et al. (2006)
    View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
    View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)
    View Run BOI1 Sample boi 1 with ha tag from october 2005 McCusker D, et al (2007)
    View Run BOI1 Sample boi1 with gst from october 2005 McCusker D, et al (2007)
    View Run BOI1 Sample bob1 (2nd set) from october 2005 McCusker D, et al (2007)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen CTF13 CLC1 1 Unpublished Fields Lab Data
    View Screen YIF1 CLC1 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data CLC1 and CHC1 Huh WK, et al. (2003)
    View Data CLC1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..233] Pfam 145.657577 Clathrin light chain No confident structure predictions are available.
    2 View Details [96..233] PSI-BLAST 17.522879 Clathrin D6 Coat


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle