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Protein Overview: UPF3

Protein Complex Data

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data UPF3 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..60] deduced N/A No confident structure predictions are available.
2 View Details [61..280] Pfam 121.070581 Smg-4/UPF3 family No confident structure predictions are available.
3 View Details [281..387] deduced N/A No confident structure predictions are available.
4 View Details [303..387] deduced N/A No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • RNA binding
  • 6.32219487559982 bayes_pls_golite062009
  • mRNA binding
  • 4.87640532914983 bayes_pls_golite062009
  • 3.85463717617256 bayes_pls_golite062009
  • nucleic acid binding
  • 3.74344299117899 bayes_pls_golite062009
  • binding
  • 2.88749864706998 bayes_pls_golite062009
  • single-stranded RNA binding
  • 2.55628738360472 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 2.0656412663177 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
  • 1.79747940153321 bayes_pls_golite062009
  • structural molecule activity
  • 1.57342338925793 bayes_pls_golite062009
  • small conjugating protein ligase activity
  • 1.54918359800898 bayes_pls_golite062009
  • poly(U) RNA binding
  • 1.23190154914055 bayes_pls_golite062009
  • protein binding
  • 1.19509385638328 bayes_pls_golite062009
  • transcription regulator activity
  • 1.10029555513317 bayes_pls_golite062009
  • acid-amino acid ligase activity
  • 1.0920515408093 bayes_pls_golite062009
  • DNA binding
  • 0.984725930713243 bayes_pls_golite062009
  • snRNA binding
  • 0.840923669704678 bayes_pls_golite062009
  • snoRNA binding
  • 0.516511855622792 bayes_pls_golite062009
  • hydrolase activity
  • 0.418157930682314 bayes_pls_golite062009
  • transcription factor activity
  • 0.255891228964936 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.229644510503376 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
  • 0.205114038263623 bayes_pls_golite062009
  • ligase activity
  • 0.115699011007988 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle