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Protein Overview: UBP1

General Information:
Name(s) found: UBP1 / YDL122W [SGD]
Description(s) found:
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  • gi|6320081|ref|NP_010161.1| Ubiquitin-specific protease that removes ubiquitin from ubiquitinated proteins; cleaves at the C terminus of ubiquitin fusions irrespective of their size; capable of cleaving polyubiquitin chains; Ubp1p [Saccharomyces cerevisia [NCBI NR]
  • pir||S67665 ubiquitin-specific proteinase (EC 3.4.-.-) UBP1 - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|1431181|emb|CAA98690.1| UBP1 [Saccharomyces cerevisiae] [NCBI NR]
  • UBP1 Ubiquitin-specific protease [mips]
  • Ubiquitin-specific protease that removes ubiquitin from ubiquitinated proteins; cleaves at the C terminus of ubiquitin fusions irrespective of their size; capable of cleaving polyubiquitin chains [SGD]
  • UBP1, Chr IV from 242551-244980 [yeast_orfs2]
  • Chr IV from 242551-244980 [yeastorf3.fasta]
  • UBP1 SGDID:S0002280, Chr IV from 242552-244981, Verified ORF [yeastflysequest.fasta]
  • Ubiquitin-specific protease that removes ubiquitin from ubiquitinated proteins; cleaves at the C terminus of ubiquitin fusions irrespective of their size; capable of cleaving polyubiquitin chains [Saccharomyces cerevisiae]gi|1431181|emb|CAA98690.1| UBP1 [nrdb_11152004_Chlamydomonas]
  • UBP1 SGDID:S000002280, Chr IV from 242552-244981, Verified ORF, "Ubiquitin-specific protease that removes ubiquitin from ubiquitinated proteins; cleaves at the C terminus of ubiquitin fusions irrespective of their size; capable of cleaving polyubiquitin c [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • Ubiquitin-specific protease that removes ubiquitin from ubiquitinated proteins; cleaves at the C terminus of ubiquitin fusions irrespective of their size; capable of cleaving polyubiquitin chains; Ubp1p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • UBP1 [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • UBP1 SGDID:S000002280, Chr IV from 242552-244981, Verified ORF, "Ubiquitin-specific protease that removes ubiquitin from ubiquitinated proteins; cleaves at the C terminus of ubiquitin fusions irrespective of their size; capable of cleaving polyubiquitin chains" [yeast-bovrabprots.fasta]
  • [chemostatdb.fasta]
  • Ubiquitin carboxyl-terminal hydrolase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBP1 PE=1 SV=2 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • UBP1 SGDID:S000002280, Chr IV from 242552-244981, Genome Release 64-1-1, Verified ORF, "Ubiquitin-specific protease that removes ubiquitin from ubiquitinated proteins; cleaves at the C terminus of ubiquitin fusions irrespective of their size; capable of cleaving polyubiquitin chains" [yeast-030211-contam.fasta]
  • UBP1 SGDID:S000002280, Chr IV from 242552-244981, Genome Release 64-2-1, Verified ORF, "Ubiquitin-specific protease; removes ubiquitin from ubiquitinated proteins; cleaves at the C terminus of ubiquitin fusions irrespective of their size; capable of cleaving polyubiquitin chains" [20141208_orf_trans.fasta]
  • YDL122W SGDID:S000002280, Chr IV from 242552-244981, Genome Release 64-1-1, Verified ORF, "Ubiquitin-specific protease that removes ubiquitin from ubiquitinated proteins; cleaves at the C terminus of ubiquitin fusions irrespective of their size; capable of cleaving polyubiquitin chains" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 809 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [ICLink to PubMed article][IDALink to PubMed article]
    endoplasmic reticulum [IDALink to PubMed article]
    Biological Process: protein deubiquitination [TASLink to PubMed article]
    Molecular Function: ubiquitin-specific protease activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLFIESKIN SLLQFLFGSR QDFLRNFKTW SNNNNNLSIY LLIFGIVVFF YKKPDHLNYI  60
   61 VESVSEMTTN FRNNNSLSRW LPRSKFTHLD EEILKRGGFI AGLVNDGNTC FMNSVLQSLA 120
  121 SSRELMEFLD NNVIRTYEEI EQNEHNEEGN GQESAQDEAT HKKNTRKGGK VYGKHKKKLN 180
  181 RKSSSKEDEE KSQEPDITFS VALRDLLSAL NAKYYRDKPY FKTNSLLKAM SKSPRKNILL 240
  241 GYDQEDAQEF FQNILAELES NVKSLNTEKL DTTPVAKSEL PDDALVGQLN LGEVGTVYIP 300
  301 TEQIDPNSIL HDKSIQNFTP FKLMTPLDGI TAERIGCLQC GENGGIRYSV FSGLSLNLPN 360
  361 ENIGSTLKLS QLLSDWSKPE IIEGVECNRC ALTAAHSHLF GQLKEFEKKP EGSIPEKLIN 420
  421 AVKDRVHQIE EVLAKPVIDD EDYKKLHTAN MVRKCSKSKQ ILISRPPPLL SIHINRSVFD 480
  481 PRTYMIRKNN SKVLFKSRLN LAPWCCDINE INLDARLPMS KKEKAAQQDS SEDENIGGEY 540
  541 YTKLHERFEQ EFEDSEEEKE YDDAEGNYAS HYNHTKDISN YDPLNGEVDG VTSDDEDEYI 600
  601 EETDALGNTI KKRIIEHSDV ENENVKDNEE LQEIDNVSLD EPKINVEDQL ETSSDEEDVI 660
  661 PAPPINYARS FSTVPATPLT YSLRSVIVHY GTHNYGHYIA FRKYRGCWWR ISDETVYVVD 720
  721 EAEVLSTPGV FMLFYEYDFD EETGKMKDDL EAIQSNNEED DEKEQEQKGV QEPKESQEQG 780
  781 EGEEQEEGQE QMKFERTEDH RDISGKDVN

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) DRS1 ERB1 HAA1 HRQ1 MKT1 STE20 UBP1

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run RLF2 phosphorylation data - cascade search Green EM, et al (2005)
    View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #11 Mitotic Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data UBP1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..81] deduced N/A Confident ab initio structure predictions are available.
    2 View Details [82..147] Pfam 12.619789 No description for PF00442 was found. No confident structure predictions are available.
    3 View Details [148..519] MSA 2.134989 View MSA. No confident structure predictions are available.
    4 View Details [520..673] MSA 2.171993 View MSA. No confident structure predictions are available.
    5 View Details [674..742] Pfam 22.119186 Ubiquitin carboxyl-terminal hydrolase No confident structure predictions are available.
    6 View Details [743..809] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
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