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Protein Overview: YCP4

General Information:
Name(s) found: YCP4 / YCR004C [SGD]
Description(s) found:
Found 32 descriptions.
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  • Protein of unknown function, has sequence and structural similarity to flavodoxins; predicted to be palmitoylated; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 247 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    mitochondrion [IDALink to PubMed articleLink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: electron carrier activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKIAIITYS TYGHIDVLAQ AVKKGVEAAG GKADIYRVEE TLPDEVLTKM NAPQKPEDIP  60
   61 VATEKTLLEY DAFLFGVPTR FGNLPAQWSA FWDKTGGLWA KGSLNGKAAG IFVSTSSYGG 120
  121 GQESTVKACL SYLAHHGIIF LPLGYKNSFA ELASIEEVHG GSPWGAGTLA GPDGSRTASP 180
  181 LELRIAEIQG KTFYETAKKL FPAKEAKPST EKKTTTSDAA KRQTKPAAAT TAEKKEDKGL 240
  241 LSCCTVM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data YCP4 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..247] PSI-BLAST 27.522879 Flavodoxin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  2.32880196921974 bayes_pls_golite062009
  • binding
    		•  1.54529414520518 bayes_pls_golite062009
  • oxidoreductase activity
    		•  1.2698167260481 bayes_pls_golite062009
  • catalytic activity
    		•  0.275631658558537 bayes_pls_golite062009
  • protein binding
    		•  0.191220795572558 bayes_pls_golite062009
  • transcription factor binding
    		•  0.0852528568191628 bayes_pls_golite062009


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle