YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: PBP2

General Information:
Name(s) found: PBP2 / YBR233W [SGD]
Description(s) found:
Found 27 descriptions.
SHOW ALL
  • RNA binding protein with similarity to mammalian heterogeneous nuclear RNP K protein, involved in the regulation of telomere position effect and telomere length [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 413 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTETTKPSI TTTPTTVLVS PNTLKRKKGE DTSEEQLEAE IKRVALKDAD SHSDNDHDSP  60
   61 DNVPSDVHLR MLCLVKHASL IVGHKGATIS RIKSETSARI NISNNIRGVP ERIVYVRGTC 120
  121 DDVAKAYGMI VRALLEEHGN EDNGEDIEIS INLLIPHHLM GCIIGKRGSR LREIEDLSAA 180
  181 KLFASPNQLL LSNDRILTIN GVPDAIHIAT FYISQTLLNF QMESPQKNVK RSIYYQPTQF 240
  241 NSVLIDHSQP NTIFHQRNHQ YHPSDKLLSY KPNKNLPISS TLLSMATPQY TTASVANATA 300
  301 FQPNFVIPNV TVLDGPVISP APGNHLLMNF VQQEIFIDEK FVGNVIGKDG KHINSVKEST 360
  361 GCSIIIQDPV EGSSERRLTI RGTFMASQAA IMLISNKIEI DRSNAERKRR SPL

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Gavin AC, et al. (2002) ADH1 GIN4 HMO1 KCC4 PBP2 PDC1 PGI1 RAD1 RAD10 YEF3 YRA1

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #31 Asynchronous Prep (Protease cleavage) Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data PBP2 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..143] PSI-BLAST 41.37734 Far upstream binding element, FBP, KH3 and KH4 domains
    2 View Details [144..243] PSI-BLAST 41.37734 Far upstream binding element, FBP, KH3 and KH4 domains
    3 View Details [244..322] deduced N/A No confident structure predictions are available.
    4 View Details [323..413] PSI-BLAST 75.69897 HnRNP K, KH3


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle