Protein Overview: SMP1

General Information:
Name(s) found:	SMP1 / YBR182C [SGD]
Description(s) found: Found 26 descriptions. SHOW ALL	Putative transcription factor involved in regulating the response to osmotic stress; member of the MADS-box family of transcription factors [SGD]
Organism:	Saccharomyces cerevisiae
Length:	452 amino acids
Gene Ontology:
Cellular Component:	nucleus [IDA] cytoplasm [IDA]
Biological Process:	regulation of response to osmotic stress [IGI][IMP] positive regulation of transcription from RNA polymerase II promoter [IGI][IMP][ISS]
Molecular Function:	transcription factor activity [IPI][ISS] DNA bending activity [IDA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRRKIEIEP IKDDRNRTVT FIKRKAGLFK KAHELSVLCQ VDIAVIILGS NNTFYEYSSV  60
   61 DMSNLLNVHQ NNTDLPHNII EPSDYGDYVK KPRVVLNERK RRRRRATVLQ PASHSGSCTV 120
  121 SSQDSSSVQN NGNLSAPLAS NDAGNAGVST PLVHCHGAIS RSGSNHSDCA RNSADYQMLQ 180
  181 GGLNSGGSFH ANDYKESVDQ QHVANEAIHR NFMNKRIRPD THLLLSESNH SNYHNFYPSP 240
  241 YENLPKPSLP ASLVGNIPSF QSQFVQVIPA NSNPMGKGFN GTGDSESFEA KQKIHPTVAI 300
  301 SNTLEGPAPV QAMVHHLHQL NSNRGKLSGK PYLKLNIPKA TNDACQRSPA MYSGTASPKT 360
  361 DVQATPNQML ASNMSSPLSR SKFLGFKNND MDDLYHNGRC GSTYVNNKTF FLKPPIGRPP 420
  421 KFPKSPSSSI VVFPSSVASS TLKSTSSTNS PD

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
transcription regulator activity	4.47820295830817	bayes_pls_golite062009
DNA binding	4.34885522982729	bayes_pls_golite062009
nucleic acid binding	4.22473647889076	bayes_pls_golite062009
sequence-specific DNA binding	3.75742221961238	bayes_pls_golite062009
binding	3.73009730829487	bayes_pls_golite062009
transcription factor activity	3.68208249443337	bayes_pls_golite062009
transcription activator activity	2.70980744336671	bayes_pls_golite062009
RNA polymerase II transcription factor activity	2.63280961628615	bayes_pls_golite062009
protein binding	2.32692027935469	bayes_pls_golite062009
specific RNA polymerase II transcription factor activity	0.37351258349543	bayes_pls_golite062009
DNA bending activity	0.167327205417291	bayes_pls_golite062009

No functions predicted.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.95

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..80]	PSI-BLAST	189.616428	Mef2a core
2	View Details	[81..277]	MSA	18.490997	View MSA. No confident structure predictions are available.
3	View Details	[278..452]	deduced	N/A	No confident structure predictions are available.
4	View Details	[348..452]	deduced	N/A	No confident structure predictions are available.

Protein Overview: SMP1

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: