| Protein: | SMP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 452 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..452] | [1..452] |
|
|
4.0E-71 | [1..255] | [1..253] |
|
|
1.0E-70 | [1..257] | [1..239] |
|
|
2.0E-69 | [1..237] | [1..248] |
|
|
7.0E-68 | [1..255] | [1..254] |
|
|
2.0E-67 | [1..237] | [1..249] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MGRRKIEIEP IKDDRNRTVT FIKRKAGLFK KAHELSVLCQ VDIAVIILGS NNTFYEYSSV 60
61 DMSNLLNVHQ NNTDLPHNII
|
| Detection Method: |  |
| Confidence: | 189.616428 |
| Match: | 1egwA_ |
| Description: | Mef2a core |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.47820295830817 | bayes_pls_golite062009 |
| DNA binding | 4.34885522982729 | bayes_pls_golite062009 |
| nucleic acid binding | 4.22473647889076 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.75742221961238 | bayes_pls_golite062009 |
| binding | 3.73009730829487 | bayes_pls_golite062009 |
| transcription factor activity | 3.68208249443337 | bayes_pls_golite062009 |
| transcription activator activity | 2.70980744336671 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.63280961628615 | bayes_pls_golite062009 |
| protein binding | 2.32692027935469 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.37351258349543 | bayes_pls_golite062009 |
| DNA bending activity | 0.167327205417291 | bayes_pls_golite062009 |
|
Region A: Residues: [81-277] |
1 11 21 31 41 51
| | | | | |
1 EPSDYGDYVK KPRVVLNERK RRRRRATVLQ PASHSGSCTV SSQDSSSVQN NGNLSAPLAS 60
61 NDAGNAGVST PLVHCHGAIS RSGSNHSDCA RNSADYQMLQ GGLNSGGSFH ANDYKESVDQ 120
121 QHVANEAIHR NFMNKRIRPD THLLLSESNH SNYHNFYPSP YENLPKPSLP ASLVGNIPSF 180
181 QSQFVQVIPA NSNPMGK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [278-452] |
1 11 21 31 41 51
| | | | | |
1 GFNGTGDSES FEAKQKIHPT VAISNTLEGP APVQAMVHHL HQLNSNRGKL SGKPYLKLNI 60
61 PKATNDACQR SPAMYSGTAS PKTDVQATPN QMLASNMSSP LSRSKFLGFK NNDMDDLYHN 120
121 GRCGSTYVNN KTFFLKPPIG RPPKFPKSPS SSIVVFPSSV ASSTLKSTSS TNSPD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [348-452] |
1 11 21 31 41 51
| | | | | |
1 SPAMYSGTAS PKTDVQATPN QMLASNMSSP LSRSKFLGFK NNDMDDLYHN GRCGSTYVNN 60
61 KTFFLKPPIG RPPKFPKSPS SSIVVFPSSV ASSTLKSTSS TNSPD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
