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Protein Overview: SMY2

General Information:
Name(s) found: SMY2 / YBR172C [SGD]
Description(s) found:
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  • gi|536518|emb|CAA85133.1| SMY2 [Saccharomyces cerevisiae] [NCBI NR]
  • gi|417787|sp|P32909|SMY2_YEAST Protein SMY2 [NCBI NR]
  • pir||S27458 SMY2 protein - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|172628|gb|AAA35057.1| Smy2p [Saccharomyces cerevisiae] [NCBI NR]
  • (P32909) Protein SMY2 [Swiss-Prot]
  • SMY2 - kinesin-related protein [mips]
  • Protein of unknown function involved in COPII vesicle formation; interacts with the Sec23p/Sec24p subcomplex; overexpression suppresses the temperature sensitivity of a myo2 mutant; has similarity to S. pombe Mpd2 [SGD]
  • SMY2, Chr II from 579108-581480, reverse complement [yeast_orfs2]
  • Chr II from 579108-581480, reverse complement [yeastorf3.fasta]
  • Chr II from 579107-581479, reverse complement [yeastorf4.fasta]
  • (P32909) SMY2 protein [4932.FASTACCERV.txt]
  • SMY2 [Saccharomyces cerevisiae]gi|417787|sp|P32909|SMY2_YEAST SMY2 proteingi|283268|pir||S27458 SMY2 protein - yeast (Saccharomyces cerevisiae)gi|172628|gb|AAA35057.1| Smy2p [nrdb_11152004_Chlamydomonas]
  • SMY2 [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Smy2p [nr-271106-contam.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 790 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: cytoskeleton organization [TASLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLELFTIL QIPTHAVQWS LRVHHFHSYS LSFYLPSSSP IYSTSQPTSI MIAPDSQRLF  60
   61 GSFDEQFKDL KLDSVDTENN NTHGVSTILD SSPASVNNNT NGAVAASVNT VPGSTFRSNT 120
  121 PLLGGRHPLS RTSSLIDSIG IQRAASPFSS MKEPFIPQSS GVMSSSFWHG DHPESRVSTP 180
  181 VQQHPLLQRN ESSSSFSYAA NLGVNLSTHS LAVDITPLST PTAAQSHVNL FPSSDIPPNM 240
  241 SMNGMSQLPA PVSVESSWRY IDTQGQIHGP FTTQMMSQWY IGGYFASTLQ ISRLGSTPET 300
  301 LGINDIFITL GELMTKLEKY DTDPFTTFDK LHVQTTSSDS INLNLAPYAS GVAATGTIKA 360
  361 TENDIFKPLT HDNIWDMDGG TTSKGVDIKL ASATTISQTD ESHKQEYKST TMLEKGKKEK 420
  421 SESVAKALLD EQEKRNRELK RKEEARLSKK QKQKEDDLLK KQKEQKEQKE KEALEAEKQK 480
  481 KSEKTKKDTQ TQTEGFKTSK DLPSLNSSSA NPAPWASKVK VNNAIETSIK NGVSSTGKKK 540
  541 GEPLGLQQRN SKEEKQKEEL KSVLNWANKS SLPSNQTIDI KSQFQKSPKG MKESSPLKEL 600
  601 EDPNFIEEQK KLWEKVQSSS KQVKSTSSAS TTTSSWTTVT SKGKAPIGTV VSPYSKTNTS 660
  661 LNSSLTAKTS TTSTTTTFAS MNNVSPRQEF IKWCKSQMKL NSGITNNNVL ELLLSLPTGP 720
  721 ESKELIQETI YANSDVMDGR RFATEFIKRR VACEKQGDDP LSWNEALALS GNDDDGWEFQ 780
  781 VVSKKKGRKH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run TOR2 No Comments Reinke A, et al. (2004)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..208] deduced N/A No confident structure predictions are available.
    2 View Details [209..550] PSI-BLAST 20.0 Heavy meromyosin subfragment
    3 View Details [551..790] MSA 10.519997 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.77

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle