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Protein Overview: gi|61357324, gi|...

General Information:
Name(s) found: gi|61357324 [NCBI NR]
gi|123997495 [NCBI NR]
gi|123993897 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|61357324|gb|AAX41371.1| xeroderma pigmentosum complementation group A [synthetic construct] [NCBI NR]
  • gi|123997495|gb|ABM86349.1| xeroderma pigmentosum, complementation group A [synthetic construct] [NCBI NR]
  • gi|123993897|gb|ABM84550.1| xeroderma pigmentosum, complementation group A [synthetic construct] [NCBI NR]
    • Organism: synthetic construct
    Length: 273 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAADGALPE AAALEQPAEL PASVRASIER KRQRALMLRQ ARLAARPYSA TAAAATGGMA  60
   61 NVKAAPKIID TGGGFILEEE EEEEQKIGKV VHQPGPVMEF DYVICEECGK EFMDSYLMNH 120
  121 FDLPTCDNCR DADDKHKLIT KTEAKQEYLL KDCDLEKREP PLKFIVKKNP HHSQWGDMKL 180
  181 YLKLQIVKRS LEVWGSQEAL EEAKEVRQEN REKMKQKKFD KKVKELRRAV RSSVWKRETI 240
  241 VHQHEYGPEE NLEDDMYRKT CTMCGHELTY EKM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..62] MSA 1.028988 View MSA. No confident structure predictions are available.
    2 View Details [63..273] PSI-BLAST 45.522879 SOLUTION STRUCTURE OF THE DNA-AND RPA-BINDING DOMAIN OF THE HUMAN REPAIR FACTOR XPA, NMR, 1 STRUCTURE

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.3712591616364 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.20400142735918 bayes_pls_golite062009
  • DNA binding
    		•  2.18702281581791 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.04270847321412 bayes_pls_golite062009
  • transcription factor activity
    		•  1.44182975349714 bayes_pls_golite062009
  • protein binding
    		•  1.14219782236887 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.71242082351425 bayes_pls_golite062009
  • transcription activator activity
    		•  0.612819891085 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.610805977602876 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.51536225088963 bayes_pls_golite062009
  • ligand-dependent nuclear receptor activity
    		•  0.44426709732278 bayes_pls_golite062009
  • transcription factor binding
    		•  0.40850395411512 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.37925266318051 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.280685154942276 bayes_pls_golite062009
  • catalytic activity
    		•  0.101795606736461 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle